Hb_089173_010

Information

Type -
Description -
Location Contig89173: 14-642
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012075950.1
description PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089173_010 0.0 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
2 Hb_001956_030 0.2066661749 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]
3 Hb_006806_010 0.2089165621 - - -
4 Hb_008246_050 0.2103567705 - - -
5 Hb_005799_040 0.2103623738 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
6 Hb_048874_010 0.211212444 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
7 Hb_169574_010 0.2116068518 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
8 Hb_162126_010 0.2117623789 - - -
9 Hb_000430_010 0.2157509929 - - -
10 Hb_125847_010 0.2202744059 - - -
11 Hb_127993_010 0.2238314803 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
12 Hb_002184_100 0.2239283109 - - hypothetical protein PRUPE_ppa020120mg [Prunus persica]
13 Hb_096671_010 0.2284900087 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
14 Hb_000904_100 0.2285147269 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
15 Hb_005285_010 0.2305450973 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
16 Hb_054362_010 0.2327028446 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
17 Hb_003226_290 0.2416809706 - - catalytic, putative [Ricinus communis]
18 Hb_168311_010 0.2439106632 - - -
19 Hb_008370_010 0.2459451642 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_001462_020 0.2476622027 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_089173_010 Hb_089173_010 Hb_001956_030 Hb_001956_030 Hb_089173_010--Hb_001956_030 Hb_006806_010 Hb_006806_010 Hb_089173_010--Hb_006806_010 Hb_008246_050 Hb_008246_050 Hb_089173_010--Hb_008246_050 Hb_005799_040 Hb_005799_040 Hb_089173_010--Hb_005799_040 Hb_048874_010 Hb_048874_010 Hb_089173_010--Hb_048874_010 Hb_169574_010 Hb_169574_010 Hb_089173_010--Hb_169574_010 Hb_054362_010 Hb_054362_010 Hb_001956_030--Hb_054362_010 Hb_127993_010 Hb_127993_010 Hb_001956_030--Hb_127993_010 Hb_001956_030--Hb_169574_010 Hb_001956_030--Hb_048874_010 Hb_001956_030--Hb_005799_040 Hb_125847_010 Hb_125847_010 Hb_006806_010--Hb_125847_010 Hb_000430_010 Hb_000430_010 Hb_006806_010--Hb_000430_010 Hb_162126_010 Hb_162126_010 Hb_006806_010--Hb_162126_010 Hb_168311_010 Hb_168311_010 Hb_006806_010--Hb_168311_010 Hb_000139_440 Hb_000139_440 Hb_006806_010--Hb_000139_440 Hb_008246_050--Hb_005799_040 Hb_008246_050--Hb_048874_010 Hb_008246_050--Hb_169574_010 Hb_008246_050--Hb_127993_010 Hb_008246_050--Hb_162126_010 Hb_008246_050--Hb_054362_010 Hb_005799_040--Hb_048874_010 Hb_005799_040--Hb_169574_010 Hb_005799_040--Hb_127993_010 Hb_005799_040--Hb_162126_010 Hb_005799_040--Hb_054362_010 Hb_048874_010--Hb_169574_010 Hb_048874_010--Hb_127993_010 Hb_048874_010--Hb_162126_010 Hb_048874_010--Hb_054362_010 Hb_169574_010--Hb_127993_010 Hb_169574_010--Hb_054362_010 Hb_169574_010--Hb_162126_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0433923 0 0 0.0512353 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.640931 0.384928 0

CAGE analysis