Hb_025457_010

Information

Type -
Description -
Location Contig25457: 5788-8588
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025457_010 0.0 - - -
2 Hb_002733_030 0.1926758637 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
3 Hb_009421_010 0.2036683764 - - -
4 Hb_097968_010 0.2479667244 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
5 Hb_002232_450 0.2486933372 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
6 Hb_002686_380 0.2568406975 - - -
7 Hb_008370_010 0.2705731845 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_002028_100 0.2716243965 - - PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
9 Hb_010142_080 0.2746817109 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
10 Hb_004413_030 0.2782944786 - - Retrotransposon protein, putative [Theobroma cacao]
11 Hb_004103_030 0.2788604841 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002513_030 0.2864466971 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
13 Hb_003446_040 0.2886125263 - - -
14 Hb_013429_020 0.2915192011 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
15 Hb_005532_010 0.2929661819 - - -
16 Hb_015707_010 0.293449204 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
17 Hb_003117_040 0.2989738978 - - cytochrome P450, putative [Ricinus communis]
18 Hb_001545_210 0.3008849538 - - hypothetical protein JCGZ_11132 [Jatropha curcas]
19 Hb_178607_010 0.304511399 - - PREDICTED: uncharacterized protein LOC105789535 [Gossypium raimondii]
20 Hb_186982_010 0.3111810558 - - PREDICTED: uncharacterized protein LOC104120222 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_025457_010 Hb_025457_010 Hb_002733_030 Hb_002733_030 Hb_025457_010--Hb_002733_030 Hb_009421_010 Hb_009421_010 Hb_025457_010--Hb_009421_010 Hb_097968_010 Hb_097968_010 Hb_025457_010--Hb_097968_010 Hb_002232_450 Hb_002232_450 Hb_025457_010--Hb_002232_450 Hb_002686_380 Hb_002686_380 Hb_025457_010--Hb_002686_380 Hb_008370_010 Hb_008370_010 Hb_025457_010--Hb_008370_010 Hb_002028_100 Hb_002028_100 Hb_002733_030--Hb_002028_100 Hb_002733_030--Hb_002232_450 Hb_003881_050 Hb_003881_050 Hb_002733_030--Hb_003881_050 Hb_001965_010 Hb_001965_010 Hb_002733_030--Hb_001965_010 Hb_002733_030--Hb_002686_380 Hb_009421_010--Hb_008370_010 Hb_010142_080 Hb_010142_080 Hb_009421_010--Hb_010142_080 Hb_005532_010 Hb_005532_010 Hb_009421_010--Hb_005532_010 Hb_013429_020 Hb_013429_020 Hb_009421_010--Hb_013429_020 Hb_020580_010 Hb_020580_010 Hb_009421_010--Hb_020580_010 Hb_004103_030 Hb_004103_030 Hb_097968_010--Hb_004103_030 Hb_015707_010 Hb_015707_010 Hb_097968_010--Hb_015707_010 Hb_097968_010--Hb_002028_100 Hb_024505_050 Hb_024505_050 Hb_097968_010--Hb_024505_050 Hb_097968_010--Hb_009421_010 Hb_002232_450--Hb_002028_100 Hb_000012_300 Hb_000012_300 Hb_002232_450--Hb_000012_300 Hb_002232_450--Hb_015707_010 Hb_002232_450--Hb_097968_010 Hb_001703_120 Hb_001703_120 Hb_002686_380--Hb_001703_120 Hb_003861_020 Hb_003861_020 Hb_002686_380--Hb_003861_020 Hb_176825_010 Hb_176825_010 Hb_002686_380--Hb_176825_010 Hb_002686_380--Hb_001965_010 Hb_008370_010--Hb_005532_010 Hb_161929_010 Hb_161929_010 Hb_008370_010--Hb_161929_010 Hb_021616_010 Hb_021616_010 Hb_008370_010--Hb_021616_010 Hb_008370_010--Hb_010142_080 Hb_089173_010 Hb_089173_010 Hb_008370_010--Hb_089173_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.350188 0.131483 0 0 0.947712 2.75473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 4.78515 2.9833 0.270285

CAGE analysis