Hb_009421_010

Information

Type -
Description -
Location Contig9421: 22795-24309
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009421_010 0.0 - - -
2 Hb_008370_010 0.152581588 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_010142_080 0.1802401648 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
4 Hb_005532_010 0.2010122488 - - -
5 Hb_025457_010 0.2036683764 - - -
6 Hb_013429_020 0.2239832233 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
7 Hb_020580_010 0.2416357286 - - -
8 Hb_004157_110 0.2508878621 - - -
9 Hb_021616_010 0.254860165 - - -
10 Hb_006806_010 0.2583591253 - - -
11 Hb_004413_030 0.2618454621 - - Retrotransposon protein, putative [Theobroma cacao]
12 Hb_097968_010 0.2768066555 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
13 Hb_003226_290 0.2970482331 - - catalytic, putative [Ricinus communis]
14 Hb_002513_030 0.2972711174 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
15 Hb_161929_010 0.2995614277 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
16 Hb_062244_010 0.300540558 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_002184_100 0.3006770974 - - hypothetical protein PRUPE_ppa020120mg [Prunus persica]
18 Hb_089173_010 0.3022417875 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
19 Hb_186982_010 0.3134469055 - - PREDICTED: uncharacterized protein LOC104120222 [Nicotiana tomentosiformis]
20 Hb_177179_010 0.3150217037 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]

Gene co-expression network

sample Hb_009421_010 Hb_009421_010 Hb_008370_010 Hb_008370_010 Hb_009421_010--Hb_008370_010 Hb_010142_080 Hb_010142_080 Hb_009421_010--Hb_010142_080 Hb_005532_010 Hb_005532_010 Hb_009421_010--Hb_005532_010 Hb_025457_010 Hb_025457_010 Hb_009421_010--Hb_025457_010 Hb_013429_020 Hb_013429_020 Hb_009421_010--Hb_013429_020 Hb_020580_010 Hb_020580_010 Hb_009421_010--Hb_020580_010 Hb_008370_010--Hb_005532_010 Hb_161929_010 Hb_161929_010 Hb_008370_010--Hb_161929_010 Hb_021616_010 Hb_021616_010 Hb_008370_010--Hb_021616_010 Hb_008370_010--Hb_010142_080 Hb_089173_010 Hb_089173_010 Hb_008370_010--Hb_089173_010 Hb_010142_080--Hb_005532_010 Hb_010142_080--Hb_021616_010 Hb_003226_290 Hb_003226_290 Hb_010142_080--Hb_003226_290 Hb_004413_030 Hb_004413_030 Hb_010142_080--Hb_004413_030 Hb_010142_080--Hb_013429_020 Hb_062244_010 Hb_062244_010 Hb_005532_010--Hb_062244_010 Hb_005532_010--Hb_021616_010 Hb_005532_010--Hb_004413_030 Hb_005483_010 Hb_005483_010 Hb_005532_010--Hb_005483_010 Hb_002733_030 Hb_002733_030 Hb_025457_010--Hb_002733_030 Hb_097968_010 Hb_097968_010 Hb_025457_010--Hb_097968_010 Hb_002232_450 Hb_002232_450 Hb_025457_010--Hb_002232_450 Hb_002686_380 Hb_002686_380 Hb_025457_010--Hb_002686_380 Hb_025457_010--Hb_008370_010 Hb_013429_020--Hb_020580_010 Hb_003321_020 Hb_003321_020 Hb_013429_020--Hb_003321_020 Hb_003117_040 Hb_003117_040 Hb_013429_020--Hb_003117_040 Hb_013429_020--Hb_021616_010 Hb_001638_220 Hb_001638_220 Hb_020580_010--Hb_001638_220 Hb_020580_010--Hb_003321_020 Hb_020580_010--Hb_003117_040 Hb_004157_110 Hb_004157_110 Hb_020580_010--Hb_004157_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.218416 0 0 0 0.393314 0.838904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 3.66787 2.5756 0

CAGE analysis