Hb_001638_220

Information

Type -
Description -
Location Contig1638: 175500-175805
Sequence    

Annotation

kegg
ID rcu:RCOM_1339590
description hypothetical protein
nr
ID XP_002515068.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNJ7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1339590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008779_010 0.172361936 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
3 Hb_008643_010 0.1727642805 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
4 Hb_020580_010 0.1833238755 - - -
5 Hb_013429_020 0.2630728543 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
6 Hb_054362_010 0.2687503425 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
7 Hb_006683_010 0.2791001282 - - cell wall invertase [Manihot esculenta]
8 Hb_002675_120 0.2805966879 - - DNA-repair protein xrcc1, putative [Ricinus communis]
9 Hb_000455_100 0.2839246168 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_127993_010 0.2858872245 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
11 Hb_003117_040 0.2862207627 - - cytochrome P450, putative [Ricinus communis]
12 Hb_004157_110 0.2939252533 - - -
13 Hb_001956_030 0.3007066947 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]
14 Hb_000050_130 0.3074507579 - - Putative Pol polyprotein from transposon element Bs1 [Triticum urartu]
15 Hb_001726_030 0.3079614609 - - Ferulic acid 5-hydroxylase 1 [Theobroma cacao]
16 Hb_169574_010 0.3232693431 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
17 Hb_048874_010 0.3253364072 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
18 Hb_005218_040 0.3282225878 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
19 Hb_028486_070 0.3293678997 - - hypothetical protein CISIN_1g028119mg [Citrus sinensis]
20 Hb_005799_040 0.3304515755 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_001638_220 Hb_001638_220 Hb_008779_010 Hb_008779_010 Hb_001638_220--Hb_008779_010 Hb_008643_010 Hb_008643_010 Hb_001638_220--Hb_008643_010 Hb_020580_010 Hb_020580_010 Hb_001638_220--Hb_020580_010 Hb_013429_020 Hb_013429_020 Hb_001638_220--Hb_013429_020 Hb_054362_010 Hb_054362_010 Hb_001638_220--Hb_054362_010 Hb_006683_010 Hb_006683_010 Hb_001638_220--Hb_006683_010 Hb_008779_010--Hb_008643_010 Hb_008779_010--Hb_054362_010 Hb_008779_010--Hb_006683_010 Hb_000455_100 Hb_000455_100 Hb_008779_010--Hb_000455_100 Hb_127993_010 Hb_127993_010 Hb_008779_010--Hb_127993_010 Hb_008643_010--Hb_054362_010 Hb_008643_010--Hb_006683_010 Hb_008643_010--Hb_000455_100 Hb_008643_010--Hb_127993_010 Hb_020580_010--Hb_013429_020 Hb_003321_020 Hb_003321_020 Hb_020580_010--Hb_003321_020 Hb_003117_040 Hb_003117_040 Hb_020580_010--Hb_003117_040 Hb_004157_110 Hb_004157_110 Hb_020580_010--Hb_004157_110 Hb_009421_010 Hb_009421_010 Hb_020580_010--Hb_009421_010 Hb_013429_020--Hb_003321_020 Hb_013429_020--Hb_003117_040 Hb_010142_080 Hb_010142_080 Hb_013429_020--Hb_010142_080 Hb_013429_020--Hb_009421_010 Hb_021616_010 Hb_021616_010 Hb_013429_020--Hb_021616_010 Hb_054362_010--Hb_127993_010 Hb_169574_010 Hb_169574_010 Hb_054362_010--Hb_169574_010 Hb_048874_010 Hb_048874_010 Hb_054362_010--Hb_048874_010 Hb_005799_040 Hb_005799_040 Hb_054362_010--Hb_005799_040 Hb_008246_050 Hb_008246_050 Hb_054362_010--Hb_008246_050 Hb_162126_010 Hb_162126_010 Hb_054362_010--Hb_162126_010 Hb_002675_120 Hb_002675_120 Hb_006683_010--Hb_002675_120 Hb_000050_130 Hb_000050_130 Hb_006683_010--Hb_000050_130 Hb_001652_110 Hb_001652_110 Hb_006683_010--Hb_001652_110 Hb_000160_100 Hb_000160_100 Hb_006683_010--Hb_000160_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.283025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.20891 3.37434 0

CAGE analysis