Hb_003117_040

Information

Type -
Description -
Location Contig3117: 28580-35267
Sequence    

Annotation

kegg
ID rcu:RCOM_1596820
description cytochrome P450, putative (EC:1.14.13.68)
nr
ID XP_002510498.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID H2DH23
description Cytochrome P450 CYP82H23 (Fragment) OS=Panax ginseng PE=2 SV=1
trembl
ID B9R855
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_1596820 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003117_040 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_003321_020 0.2010261471 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
3 Hb_020580_010 0.2090963255 - - -
4 Hb_184403_010 0.2119583631 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Gossypium raimondii]
5 Hb_013429_020 0.2222282824 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
6 Hb_183612_030 0.2691466548 - - PREDICTED: uncharacterized protein LOC105632256 [Jatropha curcas]
7 Hb_001638_220 0.2862207627 - - conserved hypothetical protein [Ricinus communis]
8 Hb_025457_010 0.2989738978 - - -
9 Hb_001006_240 0.3133551818 - - -
10 Hb_032299_060 0.3180984599 - - PREDICTED: protein UPSTREAM OF FLC-like [Elaeis guineensis]
11 Hb_009421_010 0.3201837632 - - -
12 Hb_010142_080 0.3262864838 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
13 Hb_002686_380 0.3293811096 - - -
14 Hb_002675_120 0.3313640448 - - DNA-repair protein xrcc1, putative [Ricinus communis]
15 Hb_004157_110 0.3353619975 - - -
16 Hb_028486_070 0.3386753917 - - hypothetical protein CISIN_1g028119mg [Citrus sinensis]
17 Hb_002735_020 0.3432344668 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
18 Hb_167300_010 0.3519288009 - - -
19 Hb_002774_040 0.3540551166 - - PREDICTED: annexin D1 [Jatropha curcas]
20 Hb_000050_130 0.3616573538 - - Putative Pol polyprotein from transposon element Bs1 [Triticum urartu]

Gene co-expression network

sample Hb_003117_040 Hb_003117_040 Hb_003321_020 Hb_003321_020 Hb_003117_040--Hb_003321_020 Hb_020580_010 Hb_020580_010 Hb_003117_040--Hb_020580_010 Hb_184403_010 Hb_184403_010 Hb_003117_040--Hb_184403_010 Hb_013429_020 Hb_013429_020 Hb_003117_040--Hb_013429_020 Hb_183612_030 Hb_183612_030 Hb_003117_040--Hb_183612_030 Hb_001638_220 Hb_001638_220 Hb_003117_040--Hb_001638_220 Hb_003321_020--Hb_013429_020 Hb_003321_020--Hb_183612_030 Hb_003321_020--Hb_020580_010 Hb_032299_060 Hb_032299_060 Hb_003321_020--Hb_032299_060 Hb_003321_020--Hb_184403_010 Hb_020580_010--Hb_013429_020 Hb_020580_010--Hb_001638_220 Hb_004157_110 Hb_004157_110 Hb_020580_010--Hb_004157_110 Hb_009421_010 Hb_009421_010 Hb_020580_010--Hb_009421_010 Hb_184403_010--Hb_032299_060 Hb_002686_380 Hb_002686_380 Hb_184403_010--Hb_002686_380 Hb_184403_010--Hb_183612_030 Hb_184403_010--Hb_013429_020 Hb_010142_080 Hb_010142_080 Hb_013429_020--Hb_010142_080 Hb_013429_020--Hb_009421_010 Hb_021616_010 Hb_021616_010 Hb_013429_020--Hb_021616_010 Hb_183612_030--Hb_013429_020 Hb_183612_030--Hb_020580_010 Hb_002735_020 Hb_002735_020 Hb_183612_030--Hb_002735_020 Hb_183612_030--Hb_032299_060 Hb_008779_010 Hb_008779_010 Hb_001638_220--Hb_008779_010 Hb_008643_010 Hb_008643_010 Hb_001638_220--Hb_008643_010 Hb_001638_220--Hb_013429_020 Hb_054362_010 Hb_054362_010 Hb_001638_220--Hb_054362_010 Hb_006683_010 Hb_006683_010 Hb_001638_220--Hb_006683_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0305551 0 0 0 0 0.576552
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.61554 1.20504 0.114195

CAGE analysis