Hb_002735_020

Information

Type -
Description -
Location Contig2735: 44515-46331
Sequence    

Annotation

kegg
ID rcu:RCOM_1720970
description receptor serine-threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_002521106.1
description receptor serine-threonine protein kinase, putative [Ricinus communis]
swissprot
ID Q9SFT7
description Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1
trembl
ID B9S537
description Receptor serine-threonine protein kinase, putative OS=Ricinus communis GN=RCOM_1720970 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase at3g07070-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28559: 44612-70348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002735_020 0.0 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
2 Hb_183612_030 0.2831553118 - - PREDICTED: uncharacterized protein LOC105632256 [Jatropha curcas]
3 Hb_003321_020 0.2876405355 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
4 Hb_000463_110 0.3041833498 - - -
5 Hb_002686_370 0.304183981 - - PREDICTED: uncharacterized protein LOC102628436 [Citrus sinensis]
6 Hb_092416_010 0.3041858541 - - PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas]
7 Hb_002260_230 0.3042606299 - - hypothetical protein SORBIDRAFT_05g006180 [Sorghum bicolor]
8 Hb_142295_010 0.3042678474 - - -
9 Hb_001998_040 0.3042721269 - - ATP binding protein, putative [Ricinus communis]
10 Hb_002641_150 0.3042986845 - - PREDICTED: stachyose synthase-like [Citrus sinensis]
11 Hb_001792_010 0.3043196212 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
12 Hb_165085_010 0.30436898 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
13 Hb_000589_430 0.305776141 - - hypothetical protein JCGZ_01402 [Jatropha curcas]
14 Hb_000483_170 0.3072051116 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
15 Hb_185092_010 0.3092403682 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
16 Hb_004246_010 0.3102350298 - - -
17 Hb_184403_010 0.3103495475 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Gossypium raimondii]
18 Hb_001274_010 0.31128297 - - -
19 Hb_157349_010 0.3131924737 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
20 Hb_007586_020 0.3194539576 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_002735_020 Hb_002735_020 Hb_183612_030 Hb_183612_030 Hb_002735_020--Hb_183612_030 Hb_003321_020 Hb_003321_020 Hb_002735_020--Hb_003321_020 Hb_000463_110 Hb_000463_110 Hb_002735_020--Hb_000463_110 Hb_002686_370 Hb_002686_370 Hb_002735_020--Hb_002686_370 Hb_092416_010 Hb_092416_010 Hb_002735_020--Hb_092416_010 Hb_002260_230 Hb_002260_230 Hb_002735_020--Hb_002260_230 Hb_183612_030--Hb_003321_020 Hb_013429_020 Hb_013429_020 Hb_183612_030--Hb_013429_020 Hb_003117_040 Hb_003117_040 Hb_183612_030--Hb_003117_040 Hb_020580_010 Hb_020580_010 Hb_183612_030--Hb_020580_010 Hb_032299_060 Hb_032299_060 Hb_183612_030--Hb_032299_060 Hb_003321_020--Hb_013429_020 Hb_003321_020--Hb_003117_040 Hb_003321_020--Hb_020580_010 Hb_003321_020--Hb_032299_060 Hb_184403_010 Hb_184403_010 Hb_003321_020--Hb_184403_010 Hb_000463_110--Hb_002686_370 Hb_000463_110--Hb_092416_010 Hb_142295_010 Hb_142295_010 Hb_000463_110--Hb_142295_010 Hb_000463_110--Hb_002260_230 Hb_001998_040 Hb_001998_040 Hb_000463_110--Hb_001998_040 Hb_002641_150 Hb_002641_150 Hb_000463_110--Hb_002641_150 Hb_002686_370--Hb_092416_010 Hb_002686_370--Hb_142295_010 Hb_002686_370--Hb_002260_230 Hb_002686_370--Hb_001998_040 Hb_002686_370--Hb_002641_150 Hb_092416_010--Hb_142295_010 Hb_092416_010--Hb_002260_230 Hb_092416_010--Hb_001998_040 Hb_165085_010 Hb_165085_010 Hb_092416_010--Hb_165085_010 Hb_002260_230--Hb_001998_040 Hb_002260_230--Hb_002641_150 Hb_001792_010 Hb_001792_010 Hb_002260_230--Hb_001792_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0208352 0.013879 0 0 0 0.312034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0300282 0.0560024 0.264395 0

CAGE analysis