Hb_032299_060

Information

Type -
Description -
Location Contig32299: 61601-62236
Sequence    

Annotation

kegg
ID tcc:TCM_041902
description Domain of Uncharacterized protein function, putative
nr
ID XP_010937705.1
description PREDICTED: protein UPSTREAM OF FLC-like [Elaeis guineensis]
swissprot
ID Q9LX14
description Protein UPSTREAM OF FLC OS=Arabidopsis thaliana GN=UFC PE=2 SV=1
trembl
ID A0A061GWB6
description Domain of Uncharacterized protein function, putative OS=Theobroma cacao GN=TCM_041902 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032299_060 0.0 - - PREDICTED: protein UPSTREAM OF FLC-like [Elaeis guineensis]
2 Hb_184403_010 0.2206792292 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Gossypium raimondii]
3 Hb_003321_020 0.2346069339 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
4 Hb_013429_020 0.2966930923 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
5 Hb_183612_030 0.2993191751 - - PREDICTED: uncharacterized protein LOC105632256 [Jatropha curcas]
6 Hb_003117_040 0.3180984599 - - cytochrome P450, putative [Ricinus communis]
7 Hb_020580_010 0.3230280429 - - -
8 Hb_113034_010 0.3309616472 - - -
9 Hb_123521_010 0.3414027978 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
10 Hb_174876_010 0.3534861036 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
11 Hb_004157_110 0.35405631 - - -
12 Hb_002735_020 0.3707782926 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
13 Hb_150751_010 0.371824311 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
14 Hb_000740_120 0.3726502592 - - -
15 Hb_001277_310 0.3752033536 - - PREDICTED: putative ribonuclease H protein At1g65750 [Phoenix dactylifera]
16 Hb_007054_020 0.3752747237 - - -
17 Hb_025457_010 0.3771433374 - - -
18 Hb_008768_030 0.382237317 - - -
19 Hb_002686_380 0.3857666011 - - -
20 Hb_004668_100 0.3912399244 - - -

Gene co-expression network

sample Hb_032299_060 Hb_032299_060 Hb_184403_010 Hb_184403_010 Hb_032299_060--Hb_184403_010 Hb_003321_020 Hb_003321_020 Hb_032299_060--Hb_003321_020 Hb_013429_020 Hb_013429_020 Hb_032299_060--Hb_013429_020 Hb_183612_030 Hb_183612_030 Hb_032299_060--Hb_183612_030 Hb_003117_040 Hb_003117_040 Hb_032299_060--Hb_003117_040 Hb_020580_010 Hb_020580_010 Hb_032299_060--Hb_020580_010 Hb_184403_010--Hb_003117_040 Hb_184403_010--Hb_003321_020 Hb_002686_380 Hb_002686_380 Hb_184403_010--Hb_002686_380 Hb_184403_010--Hb_183612_030 Hb_184403_010--Hb_013429_020 Hb_003321_020--Hb_013429_020 Hb_003321_020--Hb_183612_030 Hb_003321_020--Hb_003117_040 Hb_003321_020--Hb_020580_010 Hb_013429_020--Hb_020580_010 Hb_013429_020--Hb_003117_040 Hb_010142_080 Hb_010142_080 Hb_013429_020--Hb_010142_080 Hb_009421_010 Hb_009421_010 Hb_013429_020--Hb_009421_010 Hb_021616_010 Hb_021616_010 Hb_013429_020--Hb_021616_010 Hb_183612_030--Hb_013429_020 Hb_183612_030--Hb_003117_040 Hb_183612_030--Hb_020580_010 Hb_002735_020 Hb_002735_020 Hb_183612_030--Hb_002735_020 Hb_003117_040--Hb_020580_010 Hb_001638_220 Hb_001638_220 Hb_003117_040--Hb_001638_220 Hb_020580_010--Hb_001638_220 Hb_004157_110 Hb_004157_110 Hb_020580_010--Hb_004157_110 Hb_020580_010--Hb_009421_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.696167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.201209 0 0.505101 0.610077 0

CAGE analysis