Hb_184403_010

Information

Type -
Description -
Location Contig184403: 85-1045
Sequence    

Annotation

kegg
ID cit:102608772
description E3 ubiquitin-protein ligase RGLG2-like
nr
ID XP_012483864.1
description PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Gossypium raimondii]
swissprot
ID Q9SS90
description E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1
trembl
ID A0A0D2SRH4
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G034900 PE=4 SV=1
Gene Ontology
ID GO:0008152
description e3 ubiquitin-protein ligase rglg2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_184403_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Gossypium raimondii]
2 Hb_003117_040 0.2119583631 - - cytochrome P450, putative [Ricinus communis]
3 Hb_032299_060 0.2206792292 - - PREDICTED: protein UPSTREAM OF FLC-like [Elaeis guineensis]
4 Hb_003321_020 0.2385820664 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
5 Hb_002686_380 0.2766761057 - - -
6 Hb_183612_030 0.3012954457 - - PREDICTED: uncharacterized protein LOC105632256 [Jatropha curcas]
7 Hb_013429_020 0.3028699522 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
8 Hb_002735_020 0.3103495475 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
9 Hb_020580_010 0.3230063959 - - -
10 Hb_025457_010 0.3261312747 - - -
11 Hb_002815_070 0.3377005427 - - hypothetical protein PHAVU_005G048300g [Phaseolus vulgaris]
12 Hb_001006_240 0.3388954226 - - -
13 Hb_004157_110 0.3425867745 - - -
14 Hb_003861_020 0.3445389089 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2 [Nelumbo nucifera]
15 Hb_140572_010 0.3566857906 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
16 Hb_028486_070 0.3575633575 - - hypothetical protein CISIN_1g028119mg [Citrus sinensis]
17 Hb_123521_010 0.3644570812 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
18 Hb_001277_310 0.3671256732 - - PREDICTED: putative ribonuclease H protein At1g65750 [Phoenix dactylifera]
19 Hb_001660_020 0.3695905135 desease resistance Gene Name: NB-ARC hypothetical protein Csa_5G648130 [Cucumis sativus]
20 Hb_001911_060 0.3698282526 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_184403_010 Hb_184403_010 Hb_003117_040 Hb_003117_040 Hb_184403_010--Hb_003117_040 Hb_032299_060 Hb_032299_060 Hb_184403_010--Hb_032299_060 Hb_003321_020 Hb_003321_020 Hb_184403_010--Hb_003321_020 Hb_002686_380 Hb_002686_380 Hb_184403_010--Hb_002686_380 Hb_183612_030 Hb_183612_030 Hb_184403_010--Hb_183612_030 Hb_013429_020 Hb_013429_020 Hb_184403_010--Hb_013429_020 Hb_003117_040--Hb_003321_020 Hb_020580_010 Hb_020580_010 Hb_003117_040--Hb_020580_010 Hb_003117_040--Hb_013429_020 Hb_003117_040--Hb_183612_030 Hb_001638_220 Hb_001638_220 Hb_003117_040--Hb_001638_220 Hb_032299_060--Hb_003321_020 Hb_032299_060--Hb_013429_020 Hb_032299_060--Hb_183612_030 Hb_032299_060--Hb_003117_040 Hb_032299_060--Hb_020580_010 Hb_003321_020--Hb_013429_020 Hb_003321_020--Hb_183612_030 Hb_003321_020--Hb_020580_010 Hb_001703_120 Hb_001703_120 Hb_002686_380--Hb_001703_120 Hb_002733_030 Hb_002733_030 Hb_002686_380--Hb_002733_030 Hb_003861_020 Hb_003861_020 Hb_002686_380--Hb_003861_020 Hb_025457_010 Hb_025457_010 Hb_002686_380--Hb_025457_010 Hb_176825_010 Hb_176825_010 Hb_002686_380--Hb_176825_010 Hb_001965_010 Hb_001965_010 Hb_002686_380--Hb_001965_010 Hb_183612_030--Hb_013429_020 Hb_183612_030--Hb_020580_010 Hb_002735_020 Hb_002735_020 Hb_183612_030--Hb_002735_020 Hb_013429_020--Hb_020580_010 Hb_010142_080 Hb_010142_080 Hb_013429_020--Hb_010142_080 Hb_009421_010 Hb_009421_010 Hb_013429_020--Hb_009421_010 Hb_021616_010 Hb_021616_010 Hb_013429_020--Hb_021616_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.111895 0 0 0 0 5.86397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.60953 0.319185 4.07387 5.68707 0.838599

CAGE analysis