Hb_183612_030

Information

Type -
Description -
Location Contig183612: 19109-19947
Sequence    

Annotation

kegg
ID pop:POPTR_0003s10990g
description POPTRDRAFT_757344; heavy-metal-associated domain-containing family protein
nr
ID XP_012069966.1
description PREDICTED: uncharacterized protein LOC105632256 [Jatropha curcas]
swissprot
ID Q94BT9
description Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=1
trembl
ID B9GVG0
description Heavy-metal-associated domain-containing family protein OS=Populus trichocarpa GN=POPTR_0003s10990g PE=4 SV=1
Gene Ontology
ID GO:0046872
description heavy-metal-associated domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183612_030 0.0 - - PREDICTED: uncharacterized protein LOC105632256 [Jatropha curcas]
2 Hb_003321_020 0.1896366817 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
3 Hb_013429_020 0.2641728061 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
4 Hb_003117_040 0.2691466548 - - cytochrome P450, putative [Ricinus communis]
5 Hb_020580_010 0.274857487 - - -
6 Hb_002735_020 0.2831553118 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
7 Hb_032299_060 0.2993191751 - - PREDICTED: protein UPSTREAM OF FLC-like [Elaeis guineensis]
8 Hb_184403_010 0.3012954457 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Gossypium raimondii]
9 Hb_185092_010 0.3141779354 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
10 Hb_025457_010 0.3407641952 - - -
11 Hb_003952_140 0.3516593747 - - hypothetical protein POPTR_0001s24960g [Populus trichocarpa]
12 Hb_002686_380 0.3647035465 - - -
13 Hb_005539_170 0.3707217586 - - PREDICTED: uncharacterized protein LOC101502180 [Cicer arietinum]
14 Hb_010810_090 0.371087528 - - -
15 Hb_001638_220 0.372406348 - - conserved hypothetical protein [Ricinus communis]
16 Hb_123521_010 0.3734538272 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
17 Hb_028486_070 0.3772454462 - - hypothetical protein CISIN_1g028119mg [Citrus sinensis]
18 Hb_001660_020 0.3820688537 desease resistance Gene Name: NB-ARC hypothetical protein Csa_5G648130 [Cucumis sativus]
19 Hb_001277_310 0.3827853054 - - PREDICTED: putative ribonuclease H protein At1g65750 [Phoenix dactylifera]
20 Hb_009421_010 0.3856828486 - - -

Gene co-expression network

sample Hb_183612_030 Hb_183612_030 Hb_003321_020 Hb_003321_020 Hb_183612_030--Hb_003321_020 Hb_013429_020 Hb_013429_020 Hb_183612_030--Hb_013429_020 Hb_003117_040 Hb_003117_040 Hb_183612_030--Hb_003117_040 Hb_020580_010 Hb_020580_010 Hb_183612_030--Hb_020580_010 Hb_002735_020 Hb_002735_020 Hb_183612_030--Hb_002735_020 Hb_032299_060 Hb_032299_060 Hb_183612_030--Hb_032299_060 Hb_003321_020--Hb_013429_020 Hb_003321_020--Hb_003117_040 Hb_003321_020--Hb_020580_010 Hb_003321_020--Hb_032299_060 Hb_184403_010 Hb_184403_010 Hb_003321_020--Hb_184403_010 Hb_013429_020--Hb_020580_010 Hb_013429_020--Hb_003117_040 Hb_010142_080 Hb_010142_080 Hb_013429_020--Hb_010142_080 Hb_009421_010 Hb_009421_010 Hb_013429_020--Hb_009421_010 Hb_021616_010 Hb_021616_010 Hb_013429_020--Hb_021616_010 Hb_003117_040--Hb_020580_010 Hb_003117_040--Hb_184403_010 Hb_001638_220 Hb_001638_220 Hb_003117_040--Hb_001638_220 Hb_020580_010--Hb_001638_220 Hb_004157_110 Hb_004157_110 Hb_020580_010--Hb_004157_110 Hb_020580_010--Hb_009421_010 Hb_002735_020--Hb_003321_020 Hb_000463_110 Hb_000463_110 Hb_002735_020--Hb_000463_110 Hb_002686_370 Hb_002686_370 Hb_002735_020--Hb_002686_370 Hb_092416_010 Hb_092416_010 Hb_002735_020--Hb_092416_010 Hb_002260_230 Hb_002260_230 Hb_002735_020--Hb_002260_230 Hb_032299_060--Hb_184403_010 Hb_032299_060--Hb_013429_020 Hb_032299_060--Hb_003117_040 Hb_032299_060--Hb_020580_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0970311 0 0 0 0.443793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.310503 0.538956 0

CAGE analysis