Hb_003321_020

Information

Type -
Description -
Location Contig3321: 21038-21734
Sequence    

Annotation

kegg
ID cit:102612155
description TMV resistance protein N-like
nr
ID XP_006495387.1
description PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID B9T880
description Transferrin, putative OS=Ricinus communis GN=RCOM_0258090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003321_020 0.0 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
2 Hb_013429_020 0.18807674 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
3 Hb_183612_030 0.1896366817 - - PREDICTED: uncharacterized protein LOC105632256 [Jatropha curcas]
4 Hb_003117_040 0.2010261471 - - cytochrome P450, putative [Ricinus communis]
5 Hb_020580_010 0.2079923461 - - -
6 Hb_032299_060 0.2346069339 - - PREDICTED: protein UPSTREAM OF FLC-like [Elaeis guineensis]
7 Hb_184403_010 0.2385820664 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Gossypium raimondii]
8 Hb_002735_020 0.2876405355 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
9 Hb_123521_010 0.315234195 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
10 Hb_025457_010 0.325052212 - - -
11 Hb_001277_310 0.3341254434 - - PREDICTED: putative ribonuclease H protein At1g65750 [Phoenix dactylifera]
12 Hb_001638_220 0.3353293478 - - conserved hypothetical protein [Ricinus communis]
13 Hb_028486_070 0.3376103624 - - hypothetical protein CISIN_1g028119mg [Citrus sinensis]
14 Hb_009421_010 0.3426263498 - - -
15 Hb_004157_110 0.3460980008 - - -
16 Hb_004413_030 0.3563450252 - - Retrotransposon protein, putative [Theobroma cacao]
17 Hb_004079_020 0.3654800955 - - hypothetical protein glysoja_031528 [Glycine soja]
18 Hb_002686_380 0.3656009779 - - -
19 Hb_004246_010 0.3683722418 - - -
20 Hb_165085_010 0.3715558359 - - hypothetical protein JCGZ_19461 [Jatropha curcas]

Gene co-expression network

sample Hb_003321_020 Hb_003321_020 Hb_013429_020 Hb_013429_020 Hb_003321_020--Hb_013429_020 Hb_183612_030 Hb_183612_030 Hb_003321_020--Hb_183612_030 Hb_003117_040 Hb_003117_040 Hb_003321_020--Hb_003117_040 Hb_020580_010 Hb_020580_010 Hb_003321_020--Hb_020580_010 Hb_032299_060 Hb_032299_060 Hb_003321_020--Hb_032299_060 Hb_184403_010 Hb_184403_010 Hb_003321_020--Hb_184403_010 Hb_013429_020--Hb_020580_010 Hb_013429_020--Hb_003117_040 Hb_010142_080 Hb_010142_080 Hb_013429_020--Hb_010142_080 Hb_009421_010 Hb_009421_010 Hb_013429_020--Hb_009421_010 Hb_021616_010 Hb_021616_010 Hb_013429_020--Hb_021616_010 Hb_183612_030--Hb_013429_020 Hb_183612_030--Hb_003117_040 Hb_183612_030--Hb_020580_010 Hb_002735_020 Hb_002735_020 Hb_183612_030--Hb_002735_020 Hb_183612_030--Hb_032299_060 Hb_003117_040--Hb_020580_010 Hb_003117_040--Hb_184403_010 Hb_001638_220 Hb_001638_220 Hb_003117_040--Hb_001638_220 Hb_020580_010--Hb_001638_220 Hb_004157_110 Hb_004157_110 Hb_020580_010--Hb_004157_110 Hb_020580_010--Hb_009421_010 Hb_032299_060--Hb_184403_010 Hb_032299_060--Hb_013429_020 Hb_032299_060--Hb_003117_040 Hb_032299_060--Hb_020580_010 Hb_002686_380 Hb_002686_380 Hb_184403_010--Hb_002686_380 Hb_184403_010--Hb_183612_030 Hb_184403_010--Hb_013429_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.598399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.419256 0.68422 0

CAGE analysis