Hb_001965_010

Information

Type -
Description -
Location Contig1965: 16823-17379
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_009613217.1
description PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001965_010 0.0 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
2 Hb_001496_030 0.176857974 - - hypothetical protein CISIN_1g0170981mg, partial [Citrus sinensis]
3 Hb_167300_010 0.2068618249 - - -
4 Hb_002733_030 0.2466012776 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
5 Hb_002686_380 0.2682675983 - - -
6 Hb_007545_020 0.2914159679 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Nicotiana tomentosiformis]
7 Hb_001703_120 0.3088855807 - - PREDICTED: uncharacterized protein LOC105116966 isoform X2 [Populus euphratica]
8 Hb_002232_450 0.3131656674 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
9 Hb_000189_230 0.3135816646 - - Auxin-induced protein [Aegilops tauschii]
10 Hb_003861_020 0.3205065232 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2 [Nelumbo nucifera]
11 Hb_020411_010 0.3270407956 - - phosphoprotein phosphatase, putative [Ricinus communis]
12 Hb_178884_010 0.3369607964 - - putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
13 Hb_001014_130 0.3422157911 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
14 Hb_006960_010 0.3433308765 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002400_100 0.3440568975 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
16 Hb_028755_010 0.3450087625 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
17 Hb_025457_010 0.3450419294 - - -
18 Hb_004244_010 0.3452194321 - - hypothetical protein JCGZ_06191 [Jatropha curcas]
19 Hb_002419_030 0.3467793044 - - -
20 Hb_002299_050 0.3497507428 - - PREDICTED: chalcone--flavonone isomerase isoform X1 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_001965_010 Hb_001965_010 Hb_001496_030 Hb_001496_030 Hb_001965_010--Hb_001496_030 Hb_167300_010 Hb_167300_010 Hb_001965_010--Hb_167300_010 Hb_002733_030 Hb_002733_030 Hb_001965_010--Hb_002733_030 Hb_002686_380 Hb_002686_380 Hb_001965_010--Hb_002686_380 Hb_007545_020 Hb_007545_020 Hb_001965_010--Hb_007545_020 Hb_001703_120 Hb_001703_120 Hb_001965_010--Hb_001703_120 Hb_001496_030--Hb_167300_010 Hb_032920_100 Hb_032920_100 Hb_001496_030--Hb_032920_100 Hb_001965_020 Hb_001965_020 Hb_001496_030--Hb_001965_020 Hb_020411_010 Hb_020411_010 Hb_001496_030--Hb_020411_010 Hb_002506_100 Hb_002506_100 Hb_001496_030--Hb_002506_100 Hb_167300_010--Hb_002733_030 Hb_004103_030 Hb_004103_030 Hb_167300_010--Hb_004103_030 Hb_002774_040 Hb_002774_040 Hb_167300_010--Hb_002774_040 Hb_003861_020 Hb_003861_020 Hb_167300_010--Hb_003861_020 Hb_025457_010 Hb_025457_010 Hb_002733_030--Hb_025457_010 Hb_002028_100 Hb_002028_100 Hb_002733_030--Hb_002028_100 Hb_002232_450 Hb_002232_450 Hb_002733_030--Hb_002232_450 Hb_003881_050 Hb_003881_050 Hb_002733_030--Hb_003881_050 Hb_002733_030--Hb_002686_380 Hb_002686_380--Hb_001703_120 Hb_002686_380--Hb_003861_020 Hb_002686_380--Hb_025457_010 Hb_176825_010 Hb_176825_010 Hb_002686_380--Hb_176825_010 Hb_003209_160 Hb_003209_160 Hb_007545_020--Hb_003209_160 Hb_028755_010 Hb_028755_010 Hb_007545_020--Hb_028755_010 Hb_164370_010 Hb_164370_010 Hb_007545_020--Hb_164370_010 Hb_001846_050 Hb_001846_050 Hb_007545_020--Hb_001846_050 Hb_010317_030 Hb_010317_030 Hb_007545_020--Hb_010317_030 Hb_001703_120--Hb_003861_020 Hb_174473_010 Hb_174473_010 Hb_001703_120--Hb_174473_010 Hb_073452_010 Hb_073452_010 Hb_001703_120--Hb_073452_010 Hb_027402_140 Hb_027402_140 Hb_001703_120--Hb_027402_140 Hb_000193_310 Hb_000193_310 Hb_001703_120--Hb_000193_310 Hb_000684_440 Hb_000684_440 Hb_001703_120--Hb_000684_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.187471 0 0 0 0.111381 0.465135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.178115 0.393131 0.196558

CAGE analysis