Hb_001496_030

Information

Type -
Description -
Location Contig1496: 21588-27702
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDO41172.1
description hypothetical protein CISIN_1g0170981mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DQ89
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0170981mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001496_030 0.0 - - hypothetical protein CISIN_1g0170981mg, partial [Citrus sinensis]
2 Hb_001965_010 0.176857974 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
3 Hb_167300_010 0.2409334076 - - -
4 Hb_032920_100 0.3035814935 - - hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]
5 Hb_001965_020 0.3070775908 - - hypothetical protein B456_013G048700 [Gossypium raimondii]
6 Hb_020411_010 0.3095210368 - - phosphoprotein phosphatase, putative [Ricinus communis]
7 Hb_002506_100 0.3107820737 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
8 Hb_002400_100 0.3131437526 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
9 Hb_002733_030 0.315850858 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
10 Hb_000284_100 0.3224385527 - - PREDICTED: transcription factor GTE11 isoform X2 [Populus euphratica]
11 Hb_001135_280 0.3251699841 - - -
12 Hb_002686_380 0.332820047 - - -
13 Hb_000031_350 0.3377187315 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic isoform X2 [Cucumis melo]
14 Hb_000959_090 0.3391389585 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011639_040 0.3391817445 - - hypothetical protein M569_08265, partial [Genlisea aurea]
16 Hb_001773_010 0.3399204909 - - -
17 Hb_148593_010 0.3416128955 - - PREDICTED: serine/threonine-protein kinase ATR-like [Jatropha curcas]
18 Hb_021068_010 0.3425989913 - - PREDICTED: MADS-box transcription factor 23-like isoform X1 [Jatropha curcas]
19 Hb_002419_030 0.3443873672 - - -
20 Hb_001912_080 0.3456787356 - - vacuolar protein sorting-associated protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001496_030 Hb_001496_030 Hb_001965_010 Hb_001965_010 Hb_001496_030--Hb_001965_010 Hb_167300_010 Hb_167300_010 Hb_001496_030--Hb_167300_010 Hb_032920_100 Hb_032920_100 Hb_001496_030--Hb_032920_100 Hb_001965_020 Hb_001965_020 Hb_001496_030--Hb_001965_020 Hb_020411_010 Hb_020411_010 Hb_001496_030--Hb_020411_010 Hb_002506_100 Hb_002506_100 Hb_001496_030--Hb_002506_100 Hb_001965_010--Hb_167300_010 Hb_002733_030 Hb_002733_030 Hb_001965_010--Hb_002733_030 Hb_002686_380 Hb_002686_380 Hb_001965_010--Hb_002686_380 Hb_007545_020 Hb_007545_020 Hb_001965_010--Hb_007545_020 Hb_001703_120 Hb_001703_120 Hb_001965_010--Hb_001703_120 Hb_167300_010--Hb_002733_030 Hb_004103_030 Hb_004103_030 Hb_167300_010--Hb_004103_030 Hb_002774_040 Hb_002774_040 Hb_167300_010--Hb_002774_040 Hb_003861_020 Hb_003861_020 Hb_167300_010--Hb_003861_020 Hb_000330_080 Hb_000330_080 Hb_032920_100--Hb_000330_080 Hb_000284_100 Hb_000284_100 Hb_032920_100--Hb_000284_100 Hb_001009_100 Hb_001009_100 Hb_032920_100--Hb_001009_100 Hb_001709_130 Hb_001709_130 Hb_032920_100--Hb_001709_130 Hb_004884_020 Hb_004884_020 Hb_032920_100--Hb_004884_020 Hb_008123_010 Hb_008123_010 Hb_032920_100--Hb_008123_010 Hb_001031_050 Hb_001031_050 Hb_001965_020--Hb_001031_050 Hb_001965_020--Hb_000330_080 Hb_001965_020--Hb_032920_100 Hb_001965_020--Hb_001709_130 Hb_021068_010 Hb_021068_010 Hb_001965_020--Hb_021068_010 Hb_183574_010 Hb_183574_010 Hb_001965_020--Hb_183574_010 Hb_016834_010 Hb_016834_010 Hb_020411_010--Hb_016834_010 Hb_092650_010 Hb_092650_010 Hb_020411_010--Hb_092650_010 Hb_148593_010 Hb_148593_010 Hb_020411_010--Hb_148593_010 Hb_001496_140 Hb_001496_140 Hb_020411_010--Hb_001496_140 Hb_076226_010 Hb_076226_010 Hb_020411_010--Hb_076226_010 Hb_172970_010 Hb_172970_010 Hb_020411_010--Hb_172970_010 Hb_000384_040 Hb_000384_040 Hb_002506_100--Hb_000384_040 Hb_005228_110 Hb_005228_110 Hb_002506_100--Hb_005228_110 Hb_007416_370 Hb_007416_370 Hb_002506_100--Hb_007416_370 Hb_007101_200 Hb_007101_200 Hb_002506_100--Hb_007101_200 Hb_002400_100 Hb_002400_100 Hb_002506_100--Hb_002400_100 Hb_001196_050 Hb_001196_050 Hb_002506_100--Hb_001196_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.666959 0 0 0 1.48065 1.75525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.683136 2.11795 1.5085

CAGE analysis