Hb_001196_050

Information

Type -
Description -
Location Contig1196: 41530-56272
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05902: 54572-55023 , PASA_asmbl_05903: 55062-55471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001196_050 0.0 - - -
2 Hb_001329_260 0.1974410026 - - PREDICTED: uncharacterized protein LOC105642694 isoform X1 [Jatropha curcas]
3 Hb_000384_040 0.2317617104 - - PREDICTED: uncharacterized protein LOC105640093 [Jatropha curcas]
4 Hb_000749_110 0.2373669872 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
5 Hb_002518_300 0.2528587598 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
6 Hb_001247_200 0.2570949539 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
7 Hb_002506_100 0.2589823658 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
8 Hb_001946_360 0.2602479634 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
9 Hb_005228_120 0.262369628 - - phospholipase d beta, putative [Ricinus communis]
10 Hb_000101_160 0.2639793979 - - PREDICTED: uncharacterized protein LOC105133607 isoform X1 [Populus euphratica]
11 Hb_003243_020 0.2756220824 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
12 Hb_007416_370 0.2761424611 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002233_090 0.2763062708 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
14 Hb_002814_120 0.2790098779 - - PREDICTED: uncharacterized protein LOC105633463 [Jatropha curcas]
15 Hb_006882_010 0.281858208 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
16 Hb_000384_030 0.2841814835 - - PREDICTED: uncharacterized protein LOC101310565 isoform X1 [Fragaria vesca subsp. vesca]
17 Hb_003320_030 0.2843985314 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006076_020 0.2845707095 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
19 Hb_001678_020 0.2846371102 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
20 Hb_000395_140 0.2854875284 - - Oligopeptide transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001196_050 Hb_001196_050 Hb_001329_260 Hb_001329_260 Hb_001196_050--Hb_001329_260 Hb_000384_040 Hb_000384_040 Hb_001196_050--Hb_000384_040 Hb_000749_110 Hb_000749_110 Hb_001196_050--Hb_000749_110 Hb_002518_300 Hb_002518_300 Hb_001196_050--Hb_002518_300 Hb_001247_200 Hb_001247_200 Hb_001196_050--Hb_001247_200 Hb_002506_100 Hb_002506_100 Hb_001196_050--Hb_002506_100 Hb_003320_030 Hb_003320_030 Hb_001329_260--Hb_003320_030 Hb_004650_080 Hb_004650_080 Hb_001329_260--Hb_004650_080 Hb_000857_050 Hb_000857_050 Hb_001329_260--Hb_000857_050 Hb_098315_110 Hb_098315_110 Hb_001329_260--Hb_098315_110 Hb_000331_610 Hb_000331_610 Hb_001329_260--Hb_000331_610 Hb_002233_090 Hb_002233_090 Hb_000384_040--Hb_002233_090 Hb_002400_100 Hb_002400_100 Hb_000384_040--Hb_002400_100 Hb_087340_010 Hb_087340_010 Hb_000384_040--Hb_087340_010 Hb_000025_310 Hb_000025_310 Hb_000384_040--Hb_000025_310 Hb_103494_010 Hb_103494_010 Hb_000384_040--Hb_103494_010 Hb_001678_020 Hb_001678_020 Hb_000384_040--Hb_001678_020 Hb_000037_110 Hb_000037_110 Hb_000749_110--Hb_000037_110 Hb_006483_010 Hb_006483_010 Hb_000749_110--Hb_006483_010 Hb_000366_190 Hb_000366_190 Hb_000749_110--Hb_000366_190 Hb_000755_080 Hb_000755_080 Hb_000749_110--Hb_000755_080 Hb_000261_520 Hb_000261_520 Hb_000749_110--Hb_000261_520 Hb_002044_050 Hb_002044_050 Hb_000749_110--Hb_002044_050 Hb_003243_020 Hb_003243_020 Hb_002518_300--Hb_003243_020 Hb_007416_370 Hb_007416_370 Hb_002518_300--Hb_007416_370 Hb_099698_010 Hb_099698_010 Hb_002518_300--Hb_099698_010 Hb_008406_130 Hb_008406_130 Hb_002518_300--Hb_008406_130 Hb_000040_050 Hb_000040_050 Hb_002518_300--Hb_000040_050 Hb_004712_110 Hb_004712_110 Hb_002518_300--Hb_004712_110 Hb_000384_030 Hb_000384_030 Hb_001247_200--Hb_000384_030 Hb_006816_170 Hb_006816_170 Hb_001247_200--Hb_006816_170 Hb_000926_120 Hb_000926_120 Hb_001247_200--Hb_000926_120 Hb_001152_030 Hb_001152_030 Hb_001247_200--Hb_001152_030 Hb_000984_050 Hb_000984_050 Hb_001247_200--Hb_000984_050 Hb_058643_010 Hb_058643_010 Hb_001247_200--Hb_058643_010 Hb_002506_100--Hb_000384_040 Hb_005228_110 Hb_005228_110 Hb_002506_100--Hb_005228_110 Hb_002506_100--Hb_007416_370 Hb_007101_200 Hb_007101_200 Hb_002506_100--Hb_007101_200 Hb_002506_100--Hb_002400_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.194617 0 0.0233297 0.0849276 0.934795 0.333997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0712689 0 0.10097 0.227142 0.112011

CAGE analysis