Hb_007416_370

Information

Type -
Description -
Location Contig7416: 244535-248148
Sequence    

Annotation

kegg
ID rcu:RCOM_0204920
description hypothetical protein
nr
ID XP_002527971.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SPQ2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0204920 PE=4 SV=1
Gene Ontology
ID GO:0005623
description selenoprotein h-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56459: 244582-248127 , PASA_asmbl_56460: 244578-247882
cDNA
(Sanger)
(ID:Location)		 011_C21.ab1: 244582-248049

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_370 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002518_300 0.1384847461 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
3 Hb_005527_030 0.1575189507 - - PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jatropha curcas]
4 Hb_003243_020 0.1775696372 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
5 Hb_008595_010 0.1799505105 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
6 Hb_000342_080 0.1857205009 - - hypothetical protein L484_019524 [Morus notabilis]
7 Hb_009851_110 0.186221 - - structural constituent of ribosome, putative [Ricinus communis]
8 Hb_000037_110 0.1876705821 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
9 Hb_001390_010 0.1890710568 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
10 Hb_000261_520 0.1976720071 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
11 Hb_000946_170 0.1976782266 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
12 Hb_041290_010 0.198490596 - - thioredoxin family protein [Populus trichocarpa]
13 Hb_006882_010 0.1993311218 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
14 Hb_005228_080 0.2005210556 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I [Jatropha curcas]
15 Hb_079738_010 0.2012715605 - - hypothetical protein CISIN_1g036582mg, partial [Citrus sinensis]
16 Hb_002687_190 0.2015142879 - - prolyl oligopeptidase [Cicer arietinum]
17 Hb_000567_360 0.2030298997 - - hypothetical protein CISIN_1g004656mg [Citrus sinensis]
18 Hb_000940_040 0.2031210667 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
19 Hb_000329_490 0.2044754737 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
20 Hb_000243_090 0.2060485976 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007416_370 Hb_007416_370 Hb_002518_300 Hb_002518_300 Hb_007416_370--Hb_002518_300 Hb_005527_030 Hb_005527_030 Hb_007416_370--Hb_005527_030 Hb_003243_020 Hb_003243_020 Hb_007416_370--Hb_003243_020 Hb_008595_010 Hb_008595_010 Hb_007416_370--Hb_008595_010 Hb_000342_080 Hb_000342_080 Hb_007416_370--Hb_000342_080 Hb_009851_110 Hb_009851_110 Hb_007416_370--Hb_009851_110 Hb_002518_300--Hb_003243_020 Hb_099698_010 Hb_099698_010 Hb_002518_300--Hb_099698_010 Hb_008406_130 Hb_008406_130 Hb_002518_300--Hb_008406_130 Hb_000040_050 Hb_000040_050 Hb_002518_300--Hb_000040_050 Hb_004712_110 Hb_004712_110 Hb_002518_300--Hb_004712_110 Hb_005527_030--Hb_008595_010 Hb_000347_570 Hb_000347_570 Hb_005527_030--Hb_000347_570 Hb_000170_190 Hb_000170_190 Hb_005527_030--Hb_000170_190 Hb_011512_060 Hb_011512_060 Hb_005527_030--Hb_011512_060 Hb_000037_110 Hb_000037_110 Hb_005527_030--Hb_000037_110 Hb_000010_180 Hb_000010_180 Hb_005527_030--Hb_000010_180 Hb_006882_010 Hb_006882_010 Hb_003243_020--Hb_006882_010 Hb_003243_020--Hb_008406_130 Hb_002159_030 Hb_002159_030 Hb_003243_020--Hb_002159_030 Hb_001901_080 Hb_001901_080 Hb_003243_020--Hb_001901_080 Hb_003243_020--Hb_099698_010 Hb_001300_070 Hb_001300_070 Hb_008595_010--Hb_001300_070 Hb_000768_190 Hb_000768_190 Hb_008595_010--Hb_000768_190 Hb_000059_150 Hb_000059_150 Hb_008595_010--Hb_000059_150 Hb_002587_020 Hb_002587_020 Hb_008595_010--Hb_002587_020 Hb_010381_060 Hb_010381_060 Hb_008595_010--Hb_010381_060 Hb_008595_010--Hb_000037_110 Hb_009543_020 Hb_009543_020 Hb_000342_080--Hb_009543_020 Hb_002903_080 Hb_002903_080 Hb_000342_080--Hb_002903_080 Hb_001546_050 Hb_001546_050 Hb_000342_080--Hb_001546_050 Hb_007380_090 Hb_007380_090 Hb_000342_080--Hb_007380_090 Hb_000364_060 Hb_000364_060 Hb_000342_080--Hb_000364_060 Hb_000071_180 Hb_000071_180 Hb_000342_080--Hb_000071_180 Hb_004899_030 Hb_004899_030 Hb_009851_110--Hb_004899_030 Hb_004656_060 Hb_004656_060 Hb_009851_110--Hb_004656_060 Hb_005895_040 Hb_005895_040 Hb_009851_110--Hb_005895_040 Hb_000422_140 Hb_000422_140 Hb_009851_110--Hb_000422_140 Hb_004701_030 Hb_004701_030 Hb_009851_110--Hb_004701_030 Hb_003091_010 Hb_003091_010 Hb_009851_110--Hb_003091_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.14096 2.01585 8.18678 3.0418 36.3691 26.2915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.13475 4.1064 4.10541 5.18114 12.1815

CAGE analysis