Hb_004712_110

Information

Type -
Description -
Location Contig4712: 64449-68181
Sequence    

Annotation

kegg
ID rcu:RCOM_0521090
description 30S ribosomal protein S10, putative
nr
ID XP_002522724.1
description 30S ribosomal protein S10, putative [Ricinus communis]
swissprot
ID Q9M4Y3
description 30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS10 PE=2 SV=1
trembl
ID B9S9Q5
description 30S ribosomal protein S10, putative OS=Ricinus communis GN=RCOM_0521090 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 30s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004712_110 0.0 - - 30S ribosomal protein S10, putative [Ricinus communis]
2 Hb_099698_010 0.1199128836 - - -
3 Hb_000040_050 0.1290713844 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
4 Hb_000173_210 0.142154059 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
5 Hb_005228_120 0.142489131 - - phospholipase d beta, putative [Ricinus communis]
6 Hb_001534_070 0.1440528559 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
7 Hb_000940_040 0.1483652487 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
8 Hb_000580_130 0.1594669418 - - hypothetical protein JCGZ_14541 [Jatropha curcas]
9 Hb_002814_120 0.1599368597 - - PREDICTED: uncharacterized protein LOC105633463 [Jatropha curcas]
10 Hb_001946_360 0.1649861213 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
11 Hb_000317_080 0.1675680259 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
12 Hb_031073_010 0.1684892788 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
13 Hb_000392_280 0.1689122964 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
14 Hb_000258_130 0.1695689751 - - -
15 Hb_000755_080 0.169981133 - - hypothetical protein RCOM_1016710 [Ricinus communis]
16 Hb_000544_120 0.170180319 - - PREDICTED: thymidylate kinase [Jatropha curcas]
17 Hb_000987_050 0.1717191317 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
18 Hb_002903_120 0.1717857197 - - -
19 Hb_179511_010 0.1730518407 - - -
20 Hb_000318_260 0.1735872174 - - PREDICTED: cell division cycle-associated 7-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_004712_110 Hb_004712_110 Hb_099698_010 Hb_099698_010 Hb_004712_110--Hb_099698_010 Hb_000040_050 Hb_000040_050 Hb_004712_110--Hb_000040_050 Hb_000173_210 Hb_000173_210 Hb_004712_110--Hb_000173_210 Hb_005228_120 Hb_005228_120 Hb_004712_110--Hb_005228_120 Hb_001534_070 Hb_001534_070 Hb_004712_110--Hb_001534_070 Hb_000940_040 Hb_000940_040 Hb_004712_110--Hb_000940_040 Hb_099698_010--Hb_000040_050 Hb_008406_130 Hb_008406_130 Hb_099698_010--Hb_008406_130 Hb_007441_070 Hb_007441_070 Hb_099698_010--Hb_007441_070 Hb_099698_010--Hb_000173_210 Hb_003243_020 Hb_003243_020 Hb_099698_010--Hb_003243_020 Hb_030627_040 Hb_030627_040 Hb_000040_050--Hb_030627_040 Hb_004376_030 Hb_004376_030 Hb_000040_050--Hb_004376_030 Hb_000261_520 Hb_000261_520 Hb_000040_050--Hb_000261_520 Hb_000040_050--Hb_001534_070 Hb_000392_280 Hb_000392_280 Hb_000173_210--Hb_000392_280 Hb_000173_370 Hb_000173_370 Hb_000173_210--Hb_000173_370 Hb_002897_040 Hb_002897_040 Hb_000173_210--Hb_002897_040 Hb_000619_070 Hb_000619_070 Hb_000173_210--Hb_000619_070 Hb_006631_010 Hb_006631_010 Hb_000173_210--Hb_006631_010 Hb_035360_010 Hb_035360_010 Hb_000173_210--Hb_035360_010 Hb_005228_120--Hb_000940_040 Hb_005228_120--Hb_000173_210 Hb_001946_360 Hb_001946_360 Hb_005228_120--Hb_001946_360 Hb_000540_140 Hb_000540_140 Hb_005228_120--Hb_000540_140 Hb_000827_080 Hb_000827_080 Hb_005228_120--Hb_000827_080 Hb_000608_340 Hb_000608_340 Hb_005228_120--Hb_000608_340 Hb_000120_570 Hb_000120_570 Hb_001534_070--Hb_000120_570 Hb_012340_020 Hb_012340_020 Hb_001534_070--Hb_012340_020 Hb_000720_070 Hb_000720_070 Hb_001534_070--Hb_000720_070 Hb_010068_030 Hb_010068_030 Hb_001534_070--Hb_010068_030 Hb_002918_310 Hb_002918_310 Hb_001534_070--Hb_002918_310 Hb_006501_060 Hb_006501_060 Hb_001534_070--Hb_006501_060 Hb_000940_040--Hb_007441_070 Hb_019871_020 Hb_019871_020 Hb_000940_040--Hb_019871_020 Hb_011644_020 Hb_011644_020 Hb_000940_040--Hb_011644_020 Hb_004656_060 Hb_004656_060 Hb_000940_040--Hb_004656_060 Hb_000270_140 Hb_000270_140 Hb_000940_040--Hb_000270_140 Hb_000940_040--Hb_000608_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7905 5.5252 6.51572 1.62225 46.6912 18.5124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.51749 4.95987 5.8208 2.06002 4.05174

CAGE analysis