Hb_003243_020

Information

Type -
Description -
Location Contig3243: 23098-24671
Sequence    

Annotation

kegg
ID rcu:RCOM_0813700
description hypothetical protein
nr
ID XP_012066886.1
description PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RYJ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0813700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34246: 23197-24775
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003243_020 0.0 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
2 Hb_002518_300 0.117186454 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
3 Hb_006882_010 0.1206825234 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
4 Hb_008406_130 0.1361637023 - - -
5 Hb_002159_030 0.1368399304 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
6 Hb_001901_080 0.1430271836 - - PREDICTED: xylose isomerase [Jatropha curcas]
7 Hb_099698_010 0.1456216839 - - -
8 Hb_000040_050 0.1457426392 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
9 Hb_000199_080 0.1467301387 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007668_020 0.1483580407 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
11 Hb_030627_040 0.154627447 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
12 Hb_003673_020 0.1548927955 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
13 Hb_000329_490 0.1557893465 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
14 Hb_004376_030 0.1588071085 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
15 Hb_078477_040 0.1596467988 - - nuclear movement protein nudc, putative [Ricinus communis]
16 Hb_003580_040 0.1598204777 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2-like [Jatropha curcas]
17 Hb_000619_070 0.1614047362 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
18 Hb_000608_340 0.1621514787 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
19 Hb_007757_100 0.1631483716 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
20 Hb_002235_120 0.163277122 - - hypothetical protein B456_002G103400 [Gossypium raimondii]

Gene co-expression network

sample Hb_003243_020 Hb_003243_020 Hb_002518_300 Hb_002518_300 Hb_003243_020--Hb_002518_300 Hb_006882_010 Hb_006882_010 Hb_003243_020--Hb_006882_010 Hb_008406_130 Hb_008406_130 Hb_003243_020--Hb_008406_130 Hb_002159_030 Hb_002159_030 Hb_003243_020--Hb_002159_030 Hb_001901_080 Hb_001901_080 Hb_003243_020--Hb_001901_080 Hb_099698_010 Hb_099698_010 Hb_003243_020--Hb_099698_010 Hb_007416_370 Hb_007416_370 Hb_002518_300--Hb_007416_370 Hb_002518_300--Hb_099698_010 Hb_002518_300--Hb_008406_130 Hb_000040_050 Hb_000040_050 Hb_002518_300--Hb_000040_050 Hb_004712_110 Hb_004712_110 Hb_002518_300--Hb_004712_110 Hb_078477_040 Hb_078477_040 Hb_006882_010--Hb_078477_040 Hb_000329_490 Hb_000329_490 Hb_006882_010--Hb_000329_490 Hb_022250_110 Hb_022250_110 Hb_006882_010--Hb_022250_110 Hb_006882_010--Hb_001901_080 Hb_006002_030 Hb_006002_030 Hb_006882_010--Hb_006002_030 Hb_001196_060 Hb_001196_060 Hb_006882_010--Hb_001196_060 Hb_008406_130--Hb_099698_010 Hb_045502_010 Hb_045502_010 Hb_008406_130--Hb_045502_010 Hb_000544_120 Hb_000544_120 Hb_008406_130--Hb_000544_120 Hb_008406_130--Hb_000040_050 Hb_031073_010 Hb_031073_010 Hb_008406_130--Hb_031073_010 Hb_002159_040 Hb_002159_040 Hb_002159_030--Hb_002159_040 Hb_002159_030--Hb_006882_010 Hb_000441_160 Hb_000441_160 Hb_002159_030--Hb_000441_160 Hb_002159_030--Hb_000329_490 Hb_000244_240 Hb_000244_240 Hb_002159_030--Hb_000244_240 Hb_004143_070 Hb_004143_070 Hb_002159_030--Hb_004143_070 Hb_031069_020 Hb_031069_020 Hb_001901_080--Hb_031069_020 Hb_001901_080--Hb_078477_040 Hb_001731_020 Hb_001731_020 Hb_001901_080--Hb_001731_020 Hb_001489_070 Hb_001489_070 Hb_001901_080--Hb_001489_070 Hb_001901_080--Hb_006002_030 Hb_099698_010--Hb_000040_050 Hb_099698_010--Hb_004712_110 Hb_007441_070 Hb_007441_070 Hb_099698_010--Hb_007441_070 Hb_000173_210 Hb_000173_210 Hb_099698_010--Hb_000173_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.1872 6.3974 7.08702 8.04383 52.0348 46.914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.47372 3.80592 3.74872 7.71658 6.65877

CAGE analysis