Hb_000040_050

Information

Type -
Description -
Location Contig40: 57919-66271
Sequence    

Annotation

kegg
ID cit:102617857
description uncharacterized LOC102617857
nr
ID XP_006475984.1
description PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A061GRS6
description Tetratricopeptide repeat-like superfamily protein isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_037239 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39810: 60294-62166 , PASA_asmbl_39811: 61130-62166 , PASA_asmbl_39813: 63370-64409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000040_050 0.0 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
2 Hb_099698_010 0.1130080337 - - -
3 Hb_030627_040 0.127357798 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
4 Hb_004712_110 0.1290713844 - - 30S ribosomal protein S10, putative [Ricinus communis]
5 Hb_004376_030 0.1313797387 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
6 Hb_000261_520 0.1402202139 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
7 Hb_001534_070 0.140805383 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
8 Hb_003243_020 0.1457426392 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
9 Hb_006882_010 0.1486615429 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
10 Hb_000755_080 0.1512168967 - - hypothetical protein RCOM_1016710 [Ricinus communis]
11 Hb_004920_060 0.1517870017 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
12 Hb_078477_040 0.1540766425 - - nuclear movement protein nudc, putative [Ricinus communis]
13 Hb_000173_210 0.1557202628 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
14 Hb_007757_100 0.156811613 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
15 Hb_007441_070 0.1581692521 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]
16 Hb_002814_120 0.1583212608 - - PREDICTED: uncharacterized protein LOC105633463 [Jatropha curcas]
17 Hb_000619_070 0.1591281177 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
18 Hb_005228_120 0.1596431757 - - phospholipase d beta, putative [Ricinus communis]
19 Hb_002249_160 0.1598521173 - - -
20 Hb_000940_040 0.1602722321 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000040_050 Hb_000040_050 Hb_099698_010 Hb_099698_010 Hb_000040_050--Hb_099698_010 Hb_030627_040 Hb_030627_040 Hb_000040_050--Hb_030627_040 Hb_004712_110 Hb_004712_110 Hb_000040_050--Hb_004712_110 Hb_004376_030 Hb_004376_030 Hb_000040_050--Hb_004376_030 Hb_000261_520 Hb_000261_520 Hb_000040_050--Hb_000261_520 Hb_001534_070 Hb_001534_070 Hb_000040_050--Hb_001534_070 Hb_099698_010--Hb_004712_110 Hb_008406_130 Hb_008406_130 Hb_099698_010--Hb_008406_130 Hb_007441_070 Hb_007441_070 Hb_099698_010--Hb_007441_070 Hb_000173_210 Hb_000173_210 Hb_099698_010--Hb_000173_210 Hb_003243_020 Hb_003243_020 Hb_099698_010--Hb_003243_020 Hb_001390_010 Hb_001390_010 Hb_030627_040--Hb_001390_010 Hb_006882_010 Hb_006882_010 Hb_030627_040--Hb_006882_010 Hb_002159_030 Hb_002159_030 Hb_030627_040--Hb_002159_030 Hb_005460_030 Hb_005460_030 Hb_030627_040--Hb_005460_030 Hb_003436_050 Hb_003436_050 Hb_030627_040--Hb_003436_050 Hb_004712_110--Hb_000173_210 Hb_005228_120 Hb_005228_120 Hb_004712_110--Hb_005228_120 Hb_004712_110--Hb_001534_070 Hb_000940_040 Hb_000940_040 Hb_004712_110--Hb_000940_040 Hb_005408_020 Hb_005408_020 Hb_004376_030--Hb_005408_020 Hb_000914_080 Hb_000914_080 Hb_004376_030--Hb_000914_080 Hb_004920_060 Hb_004920_060 Hb_004376_030--Hb_004920_060 Hb_004376_030--Hb_000261_520 Hb_000640_220 Hb_000640_220 Hb_004376_030--Hb_000640_220 Hb_078477_040 Hb_078477_040 Hb_004376_030--Hb_078477_040 Hb_000755_080 Hb_000755_080 Hb_000261_520--Hb_000755_080 Hb_000375_030 Hb_000375_030 Hb_000261_520--Hb_000375_030 Hb_091384_010 Hb_091384_010 Hb_000261_520--Hb_091384_010 Hb_000261_520--Hb_000640_220 Hb_005895_040 Hb_005895_040 Hb_000261_520--Hb_005895_040 Hb_000120_570 Hb_000120_570 Hb_001534_070--Hb_000120_570 Hb_012340_020 Hb_012340_020 Hb_001534_070--Hb_012340_020 Hb_000720_070 Hb_000720_070 Hb_001534_070--Hb_000720_070 Hb_010068_030 Hb_010068_030 Hb_001534_070--Hb_010068_030 Hb_002918_310 Hb_002918_310 Hb_001534_070--Hb_002918_310 Hb_006501_060 Hb_006501_060 Hb_001534_070--Hb_006501_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.71977 0.64571 0.560848 0.559731 3.54427 1.79333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.253522 0.199498 0.547789 0.242448 0.398413

CAGE analysis