Hb_000331_610

Information

Type -
Description -
Location Contig331: 481943-484845
Sequence    

Annotation

kegg
ID fve:101295342
description probable Ufm1-specific protease-like
nr
ID KJB19555.1
description hypothetical protein B456_003G108600 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2RKC3
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G108600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_610 0.0 - - hypothetical protein B456_003G108600 [Gossypium raimondii]
2 Hb_098315_110 0.1435421363 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000317_080 0.1552602894 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
4 Hb_000300_530 0.1630267666 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
5 Hb_130177_010 0.166998329 - - hypothetical protein RCOM_0897890 [Ricinus communis]
6 Hb_001628_110 0.17159788 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
7 Hb_002078_040 0.1752315465 - - protein with unknown function [Ricinus communis]
8 Hb_001268_230 0.1803664843 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
9 Hb_004032_240 0.1805289071 - - electron transporter, putative [Ricinus communis]
10 Hb_023610_010 0.1835274874 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008453_020 0.185145459 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
12 Hb_004648_040 0.1870907914 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
13 Hb_154381_050 0.1873450954 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010931_110 0.1874097916 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_000230_110 0.195346138 - - PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
16 Hb_128548_020 0.1974481477 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
17 Hb_095397_010 0.1976094307 - - hypothetical protein 25 [Hevea brasiliensis]
18 Hb_000958_010 0.1981085788 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000050_120 0.1992253122 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
20 Hb_010368_070 0.1997150531 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000331_610 Hb_000331_610 Hb_098315_110 Hb_098315_110 Hb_000331_610--Hb_098315_110 Hb_000317_080 Hb_000317_080 Hb_000331_610--Hb_000317_080 Hb_000300_530 Hb_000300_530 Hb_000331_610--Hb_000300_530 Hb_130177_010 Hb_130177_010 Hb_000331_610--Hb_130177_010 Hb_001628_110 Hb_001628_110 Hb_000331_610--Hb_001628_110 Hb_002078_040 Hb_002078_040 Hb_000331_610--Hb_002078_040 Hb_098315_110--Hb_000300_530 Hb_001268_230 Hb_001268_230 Hb_098315_110--Hb_001268_230 Hb_004648_040 Hb_004648_040 Hb_098315_110--Hb_004648_040 Hb_098315_110--Hb_000317_080 Hb_098315_110--Hb_130177_010 Hb_006029_010 Hb_006029_010 Hb_098315_110--Hb_006029_010 Hb_000317_080--Hb_001268_230 Hb_053543_010 Hb_053543_010 Hb_000317_080--Hb_053543_010 Hb_000987_050 Hb_000987_050 Hb_000317_080--Hb_000987_050 Hb_000317_080--Hb_004648_040 Hb_000317_080--Hb_001628_110 Hb_003125_050 Hb_003125_050 Hb_000300_530--Hb_003125_050 Hb_023610_010 Hb_023610_010 Hb_000300_530--Hb_023610_010 Hb_012654_020 Hb_012654_020 Hb_000300_530--Hb_012654_020 Hb_011021_030 Hb_011021_030 Hb_000300_530--Hb_011021_030 Hb_154381_050 Hb_154381_050 Hb_000300_530--Hb_154381_050 Hb_010931_110 Hb_010931_110 Hb_130177_010--Hb_010931_110 Hb_130177_010--Hb_006029_010 Hb_000300_540 Hb_000300_540 Hb_130177_010--Hb_000300_540 Hb_010368_070 Hb_010368_070 Hb_130177_010--Hb_010368_070 Hb_130177_010--Hb_000987_050 Hb_001628_110--Hb_002078_040 Hb_002172_030 Hb_002172_030 Hb_001628_110--Hb_002172_030 Hb_001628_110--Hb_154381_050 Hb_005410_010 Hb_005410_010 Hb_001628_110--Hb_005410_010 Hb_043637_010 Hb_043637_010 Hb_001628_110--Hb_043637_010 Hb_003507_020 Hb_003507_020 Hb_001628_110--Hb_003507_020 Hb_000050_120 Hb_000050_120 Hb_002078_040--Hb_000050_120 Hb_003304_080 Hb_003304_080 Hb_002078_040--Hb_003304_080 Hb_007810_040 Hb_007810_040 Hb_002078_040--Hb_007810_040 Hb_002078_040--Hb_012654_020 Hb_002078_040--Hb_002172_030 Hb_002078_040--Hb_154381_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03308 0.0211672 0 0.166614 2.13822 0.601444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.290668 0.365734 0.500987 0.202814 0.0927386

CAGE analysis