Hb_002506_100

Information

Type -
Description -
Location Contig2506: 147911-151045
Sequence    

Annotation

kegg
ID tcc:TCM_006653
description Glycosyl hydrolase family 10 protein isoform 1
nr
ID XP_012081746.1
description PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
swissprot
ID P26514
description Endo-1,4-beta-xylanase A OS=Streptomyces lividans GN=xlnA PE=1 SV=2
trembl
ID A0A061E086
description Glycosyl hydrolase family 10 protein isoform 1 OS=Theobroma cacao GN=TCM_006653 PE=4 SV=1
Gene Ontology
ID GO:0031176
description probable endo- -beta-xylanase c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002506_100 0.0 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
2 Hb_000384_040 0.2359066521 - - PREDICTED: uncharacterized protein LOC105640093 [Jatropha curcas]
3 Hb_005228_110 0.2407626213 - - Cleavage and polyadenylation specificity factor subunit 3 [Fukomys damarensis]
4 Hb_007416_370 0.2543877769 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007101_200 0.2579933077 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X1 [Jatropha curcas]
6 Hb_002400_100 0.2582634763 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
7 Hb_001196_050 0.2589823658 - - -
8 Hb_000513_070 0.2594711316 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
9 Hb_001135_280 0.263082715 - - -
10 Hb_000384_030 0.2630947214 - - PREDICTED: uncharacterized protein LOC101310565 isoform X1 [Fragaria vesca subsp. vesca]
11 Hb_000284_100 0.2643892897 - - PREDICTED: transcription factor GTE11 isoform X2 [Populus euphratica]
12 Hb_000057_050 0.2656484728 - - hypothetical protein Csa_7G132920 [Cucumis sativus]
13 Hb_002233_090 0.2731653344 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
14 Hb_001959_050 0.2794500385 - - PREDICTED: uncharacterized protein LOC103323811 isoform X1 [Prunus mume]
15 Hb_000932_100 0.2843967025 - - -
16 Hb_006452_090 0.288605903 - - PREDICTED: eukaryotic translation initiation factor 5B [Jatropha curcas]
17 Hb_003206_020 0.2900475997 - - PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X2 [Vitis vinifera]
18 Hb_006816_170 0.2945777665 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
19 Hb_001912_080 0.2953459919 - - vacuolar protein sorting-associated protein, putative [Ricinus communis]
20 Hb_000363_460 0.2965278868 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002506_100 Hb_002506_100 Hb_000384_040 Hb_000384_040 Hb_002506_100--Hb_000384_040 Hb_005228_110 Hb_005228_110 Hb_002506_100--Hb_005228_110 Hb_007416_370 Hb_007416_370 Hb_002506_100--Hb_007416_370 Hb_007101_200 Hb_007101_200 Hb_002506_100--Hb_007101_200 Hb_002400_100 Hb_002400_100 Hb_002506_100--Hb_002400_100 Hb_001196_050 Hb_001196_050 Hb_002506_100--Hb_001196_050 Hb_002233_090 Hb_002233_090 Hb_000384_040--Hb_002233_090 Hb_000384_040--Hb_002400_100 Hb_087340_010 Hb_087340_010 Hb_000384_040--Hb_087340_010 Hb_000025_310 Hb_000025_310 Hb_000384_040--Hb_000025_310 Hb_103494_010 Hb_103494_010 Hb_000384_040--Hb_103494_010 Hb_001678_020 Hb_001678_020 Hb_000384_040--Hb_001678_020 Hb_028872_050 Hb_028872_050 Hb_005228_110--Hb_028872_050 Hb_000028_040 Hb_000028_040 Hb_005228_110--Hb_000028_040 Hb_002872_020 Hb_002872_020 Hb_005228_110--Hb_002872_020 Hb_001959_050 Hb_001959_050 Hb_005228_110--Hb_001959_050 Hb_034083_010 Hb_034083_010 Hb_005228_110--Hb_034083_010 Hb_000932_100 Hb_000932_100 Hb_005228_110--Hb_000932_100 Hb_002518_300 Hb_002518_300 Hb_007416_370--Hb_002518_300 Hb_005527_030 Hb_005527_030 Hb_007416_370--Hb_005527_030 Hb_003243_020 Hb_003243_020 Hb_007416_370--Hb_003243_020 Hb_008595_010 Hb_008595_010 Hb_007416_370--Hb_008595_010 Hb_000342_080 Hb_000342_080 Hb_007416_370--Hb_000342_080 Hb_009851_110 Hb_009851_110 Hb_007416_370--Hb_009851_110 Hb_003206_020 Hb_003206_020 Hb_007101_200--Hb_003206_020 Hb_000832_130 Hb_000832_130 Hb_007101_200--Hb_000832_130 Hb_000951_110 Hb_000951_110 Hb_007101_200--Hb_000951_110 Hb_000959_090 Hb_000959_090 Hb_007101_200--Hb_000959_090 Hb_000136_040 Hb_000136_040 Hb_007101_200--Hb_000136_040 Hb_009543_020 Hb_009543_020 Hb_007101_200--Hb_009543_020 Hb_001116_020 Hb_001116_020 Hb_002400_100--Hb_001116_020 Hb_002400_100--Hb_002233_090 Hb_051407_010 Hb_051407_010 Hb_002400_100--Hb_051407_010 Hb_000384_030 Hb_000384_030 Hb_002400_100--Hb_000384_030 Hb_010436_020 Hb_010436_020 Hb_002400_100--Hb_010436_020 Hb_001329_260 Hb_001329_260 Hb_001196_050--Hb_001329_260 Hb_001196_050--Hb_000384_040 Hb_000749_110 Hb_000749_110 Hb_001196_050--Hb_000749_110 Hb_001196_050--Hb_002518_300 Hb_001247_200 Hb_001247_200 Hb_001196_050--Hb_001247_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0274469 0 0.0246379 0.0165362 0.396785 0.201227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0502978 0.0197871 0.112256 0.141839 0.208454

CAGE analysis