Hb_001329_260

Information

Type -
Description -
Location Contig1329: 184111-187736
Sequence    

Annotation

kegg
ID rcu:RCOM_1343820
description hypothetical protein
nr
ID XP_012082991.1
description PREDICTED: uncharacterized protein LOC105642694 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09440: 186340-187674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_260 0.0 - - PREDICTED: uncharacterized protein LOC105642694 isoform X1 [Jatropha curcas]
2 Hb_003320_030 0.1586456166 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004650_080 0.1897276727 - - -
4 Hb_001196_050 0.1974410026 - - -
5 Hb_000857_050 0.2067162323 - - PREDICTED: protein YLS9 [Jatropha curcas]
6 Hb_098315_110 0.2072566992 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000331_610 0.2097763224 - - hypothetical protein B456_003G108600 [Gossypium raimondii]
8 Hb_000317_080 0.2122996491 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
9 Hb_001946_360 0.2145633486 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
10 Hb_004648_040 0.2145927423 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
11 Hb_141838_010 0.2151920504 - - -
12 Hb_008147_030 0.219306572 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
13 Hb_099698_010 0.2230210855 - - -
14 Hb_031073_010 0.2241203955 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
15 Hb_000832_200 0.2261786542 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
16 Hb_000040_050 0.2262733164 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
17 Hb_001268_230 0.2297212735 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
18 Hb_003768_040 0.2307627842 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_105427_010 0.2333271474 - - -
20 Hb_005228_120 0.2337350508 - - phospholipase d beta, putative [Ricinus communis]

Gene co-expression network

sample Hb_001329_260 Hb_001329_260 Hb_003320_030 Hb_003320_030 Hb_001329_260--Hb_003320_030 Hb_004650_080 Hb_004650_080 Hb_001329_260--Hb_004650_080 Hb_001196_050 Hb_001196_050 Hb_001329_260--Hb_001196_050 Hb_000857_050 Hb_000857_050 Hb_001329_260--Hb_000857_050 Hb_098315_110 Hb_098315_110 Hb_001329_260--Hb_098315_110 Hb_000331_610 Hb_000331_610 Hb_001329_260--Hb_000331_610 Hb_002983_100 Hb_002983_100 Hb_003320_030--Hb_002983_100 Hb_005116_020 Hb_005116_020 Hb_003320_030--Hb_005116_020 Hb_001159_210 Hb_001159_210 Hb_003320_030--Hb_001159_210 Hb_000038_150 Hb_000038_150 Hb_003320_030--Hb_000038_150 Hb_134732_010 Hb_134732_010 Hb_003320_030--Hb_134732_010 Hb_004097_020 Hb_004097_020 Hb_004650_080--Hb_004097_020 Hb_003768_040 Hb_003768_040 Hb_004650_080--Hb_003768_040 Hb_001946_360 Hb_001946_360 Hb_004650_080--Hb_001946_360 Hb_168978_040 Hb_168978_040 Hb_004650_080--Hb_168978_040 Hb_097433_010 Hb_097433_010 Hb_004650_080--Hb_097433_010 Hb_000384_040 Hb_000384_040 Hb_001196_050--Hb_000384_040 Hb_000749_110 Hb_000749_110 Hb_001196_050--Hb_000749_110 Hb_002518_300 Hb_002518_300 Hb_001196_050--Hb_002518_300 Hb_001247_200 Hb_001247_200 Hb_001196_050--Hb_001247_200 Hb_002506_100 Hb_002506_100 Hb_001196_050--Hb_002506_100 Hb_000832_200 Hb_000832_200 Hb_000857_050--Hb_000832_200 Hb_000099_220 Hb_000099_220 Hb_000857_050--Hb_000099_220 Hb_000101_160 Hb_000101_160 Hb_000857_050--Hb_000101_160 Hb_000857_050--Hb_003768_040 Hb_000431_020 Hb_000431_020 Hb_000857_050--Hb_000431_020 Hb_000300_530 Hb_000300_530 Hb_098315_110--Hb_000300_530 Hb_001268_230 Hb_001268_230 Hb_098315_110--Hb_001268_230 Hb_004648_040 Hb_004648_040 Hb_098315_110--Hb_004648_040 Hb_000317_080 Hb_000317_080 Hb_098315_110--Hb_000317_080 Hb_130177_010 Hb_130177_010 Hb_098315_110--Hb_130177_010 Hb_006029_010 Hb_006029_010 Hb_098315_110--Hb_006029_010 Hb_000331_610--Hb_098315_110 Hb_000331_610--Hb_000317_080 Hb_000331_610--Hb_000300_530 Hb_000331_610--Hb_130177_010 Hb_001628_110 Hb_001628_110 Hb_000331_610--Hb_001628_110 Hb_002078_040 Hb_002078_040 Hb_000331_610--Hb_002078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.5987 1.05313 2.02265 9.68245 87.9127 21.0923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.54304 0.734219 11.919 5.30803 3.66644

CAGE analysis