Hb_168978_040

Information

Type -
Description -
Location Contig168978: 42554-43586
Sequence    

Annotation

kegg
ID pop:POPTR_0005s13290g
description hypothetical protein
nr
ID XP_012068076.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
swissprot
ID Q56XI1
description Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
trembl
ID A0A067KZ85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15928 PE=4 SV=1
Gene Ontology
ID GO:0008152
description pentatricopeptide repeat-containing protein at5g52630

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168978_040 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
2 Hb_007382_020 0.1988211505 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
3 Hb_025194_030 0.2140917129 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
4 Hb_011515_030 0.2185152112 - - -
5 Hb_004650_080 0.2190101181 - - -
6 Hb_002983_100 0.223708999 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
7 Hb_029508_010 0.2261564505 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
8 Hb_008749_050 0.2391488304 - - PREDICTED: uncharacterized J domain-containing protein C4H3.01 [Jatropha curcas]
9 Hb_004846_180 0.2443450865 - - heat shock protein, putative [Ricinus communis]
10 Hb_000853_300 0.2459361734 - - -
11 Hb_000362_240 0.2541925265 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000479_120 0.2569598402 transcription factor TF Family: FAR1 FAR1-related sequence 5 [Theobroma cacao]
13 Hb_000424_160 0.2602143933 - - hypothetical protein POPTR_0006s23570g [Populus trichocarpa]
14 Hb_007127_010 0.2608284233 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
15 Hb_085375_010 0.263925195 - - protein with unknown function [Ricinus communis]
16 Hb_000115_170 0.2655418162 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
17 Hb_141838_010 0.2657268598 - - -
18 Hb_000008_050 0.2676425137 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
19 Hb_004097_020 0.2677820045 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003320_030 0.2689045516 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_168978_040 Hb_168978_040 Hb_007382_020 Hb_007382_020 Hb_168978_040--Hb_007382_020 Hb_025194_030 Hb_025194_030 Hb_168978_040--Hb_025194_030 Hb_011515_030 Hb_011515_030 Hb_168978_040--Hb_011515_030 Hb_004650_080 Hb_004650_080 Hb_168978_040--Hb_004650_080 Hb_002983_100 Hb_002983_100 Hb_168978_040--Hb_002983_100 Hb_029508_010 Hb_029508_010 Hb_168978_040--Hb_029508_010 Hb_007382_020--Hb_025194_030 Hb_004846_180 Hb_004846_180 Hb_007382_020--Hb_004846_180 Hb_008749_050 Hb_008749_050 Hb_007382_020--Hb_008749_050 Hb_184326_010 Hb_184326_010 Hb_007382_020--Hb_184326_010 Hb_003992_260 Hb_003992_260 Hb_007382_020--Hb_003992_260 Hb_025194_030--Hb_004846_180 Hb_025194_030--Hb_008749_050 Hb_025194_030--Hb_184326_010 Hb_000140_370 Hb_000140_370 Hb_025194_030--Hb_000140_370 Hb_000853_290 Hb_000853_290 Hb_025194_030--Hb_000853_290 Hb_141838_010 Hb_141838_010 Hb_011515_030--Hb_141838_010 Hb_011515_030--Hb_002983_100 Hb_000317_080 Hb_000317_080 Hb_011515_030--Hb_000317_080 Hb_002903_120 Hb_002903_120 Hb_011515_030--Hb_002903_120 Hb_004092_010 Hb_004092_010 Hb_011515_030--Hb_004092_010 Hb_003320_030 Hb_003320_030 Hb_011515_030--Hb_003320_030 Hb_001329_260 Hb_001329_260 Hb_004650_080--Hb_001329_260 Hb_004097_020 Hb_004097_020 Hb_004650_080--Hb_004097_020 Hb_003768_040 Hb_003768_040 Hb_004650_080--Hb_003768_040 Hb_001946_360 Hb_001946_360 Hb_004650_080--Hb_001946_360 Hb_097433_010 Hb_097433_010 Hb_004650_080--Hb_097433_010 Hb_005116_020 Hb_005116_020 Hb_002983_100--Hb_005116_020 Hb_002983_100--Hb_003320_030 Hb_002983_100--Hb_141838_010 Hb_059126_010 Hb_059126_010 Hb_002983_100--Hb_059126_010 Hb_033225_020 Hb_033225_020 Hb_002983_100--Hb_033225_020 Hb_001125_030 Hb_001125_030 Hb_002983_100--Hb_001125_030 Hb_029508_010--Hb_025194_030 Hb_002890_190 Hb_002890_190 Hb_029508_010--Hb_002890_190 Hb_005730_100 Hb_005730_100 Hb_029508_010--Hb_005730_100 Hb_085375_010 Hb_085375_010 Hb_029508_010--Hb_085375_010 Hb_029508_010--Hb_097433_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.37796 1.10943 0.018233 0.0642163 10.5409 0.560852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.445954 0.306876 0.160535 0.229635 0.356682

CAGE analysis