Hb_141838_010

Information

Type -
Description -
Location Contig141838: 63-2924
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11219: 1370-1815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141838_010 0.0 - - -
2 Hb_011515_030 0.1299247718 - - -
3 Hb_008147_030 0.1615190858 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
4 Hb_002983_100 0.1648477996 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
5 Hb_003320_030 0.1788942331 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004092_010 0.1880369847 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
7 Hb_002903_120 0.2002917271 - - -
8 Hb_000548_010 0.201795232 - - -
9 Hb_001329_260 0.2151920504 - - PREDICTED: uncharacterized protein LOC105642694 isoform X1 [Jatropha curcas]
10 Hb_000331_610 0.2156657585 - - hypothetical protein B456_003G108600 [Gossypium raimondii]
11 Hb_000317_080 0.216980412 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
12 Hb_002493_030 0.2172564846 - - -
13 Hb_001268_230 0.2180116073 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
14 Hb_010368_070 0.2212770274 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004650_080 0.2247593711 - - -
16 Hb_098315_110 0.2292457891 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005057_010 0.2295567429 - - -
18 Hb_000987_050 0.2311985705 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
19 Hb_002232_290 0.23124413 - - -
20 Hb_000976_180 0.237839127 - - PREDICTED: uncharacterized protein LOC102592049 [Solanum tuberosum]

Gene co-expression network

sample Hb_141838_010 Hb_141838_010 Hb_011515_030 Hb_011515_030 Hb_141838_010--Hb_011515_030 Hb_008147_030 Hb_008147_030 Hb_141838_010--Hb_008147_030 Hb_002983_100 Hb_002983_100 Hb_141838_010--Hb_002983_100 Hb_003320_030 Hb_003320_030 Hb_141838_010--Hb_003320_030 Hb_004092_010 Hb_004092_010 Hb_141838_010--Hb_004092_010 Hb_002903_120 Hb_002903_120 Hb_141838_010--Hb_002903_120 Hb_011515_030--Hb_002983_100 Hb_000317_080 Hb_000317_080 Hb_011515_030--Hb_000317_080 Hb_011515_030--Hb_002903_120 Hb_011515_030--Hb_004092_010 Hb_011515_030--Hb_003320_030 Hb_000548_010 Hb_000548_010 Hb_008147_030--Hb_000548_010 Hb_001268_230 Hb_001268_230 Hb_008147_030--Hb_001268_230 Hb_008147_030--Hb_003320_030 Hb_031862_170 Hb_031862_170 Hb_008147_030--Hb_031862_170 Hb_004460_020 Hb_004460_020 Hb_008147_030--Hb_004460_020 Hb_005116_020 Hb_005116_020 Hb_002983_100--Hb_005116_020 Hb_002983_100--Hb_003320_030 Hb_059126_010 Hb_059126_010 Hb_002983_100--Hb_059126_010 Hb_033225_020 Hb_033225_020 Hb_002983_100--Hb_033225_020 Hb_001125_030 Hb_001125_030 Hb_002983_100--Hb_001125_030 Hb_001329_260 Hb_001329_260 Hb_003320_030--Hb_001329_260 Hb_003320_030--Hb_005116_020 Hb_001159_210 Hb_001159_210 Hb_003320_030--Hb_001159_210 Hb_000038_150 Hb_000038_150 Hb_003320_030--Hb_000038_150 Hb_134732_010 Hb_134732_010 Hb_003320_030--Hb_134732_010 Hb_000525_040 Hb_000525_040 Hb_004092_010--Hb_000525_040 Hb_010368_070 Hb_010368_070 Hb_004092_010--Hb_010368_070 Hb_011616_030 Hb_011616_030 Hb_004092_010--Hb_011616_030 Hb_005057_010 Hb_005057_010 Hb_004092_010--Hb_005057_010 Hb_095397_010 Hb_095397_010 Hb_004092_010--Hb_095397_010 Hb_001146_070 Hb_001146_070 Hb_004092_010--Hb_001146_070 Hb_002903_120--Hb_010368_070 Hb_000173_210 Hb_000173_210 Hb_002903_120--Hb_000173_210 Hb_002897_040 Hb_002897_040 Hb_002903_120--Hb_002897_040 Hb_002903_120--Hb_000525_040 Hb_045502_010 Hb_045502_010 Hb_002903_120--Hb_045502_010 Hb_000544_120 Hb_000544_120 Hb_002903_120--Hb_000544_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.7589 0.702939 0.528064 0.464085 81.9086 14.1235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.25086 4.19949 9.86344 1.88883 0.615787

CAGE analysis