Hb_000099_220

Information

Type -
Description -
Location Contig99: 262919-275112
Sequence    

Annotation

kegg
ID rcu:RCOM_1689360
description hydrolase, hydrolyzing O-glycosyl compounds, putative
nr
ID XP_002509877.1
description hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
swissprot
ID P23548
description Endoglucanase OS=Paenibacillus polymyxa PE=3 SV=2
trembl
ID B9RCJ3
description Hydrolase, hydrolyzing O-glycosyl compounds, putative OS=Ricinus communis GN=RCOM_1689360 PE=3 SV=1
Gene Ontology
ID GO:0004553
description hydrolyzing o-glycosyl

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_220 0.0 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
2 Hb_003768_040 0.1547759712 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000857_050 0.1826760662 - - PREDICTED: protein YLS9 [Jatropha curcas]
4 Hb_000590_030 0.1959919641 - - conserved hypothetical protein [Ricinus communis]
5 Hb_064885_020 0.2086027432 - - -
6 Hb_002450_110 0.2138421598 - - PREDICTED: geraniol 8-hydroxylase-like [Beta vulgaris subsp. vulgaris]
7 Hb_104812_030 0.2227187328 - - hypothetical protein POPTR_0178s00210g [Populus trichocarpa]
8 Hb_000832_200 0.2263889001 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
9 Hb_000431_020 0.2279063221 - - hypothetical protein JCGZ_06801 [Jatropha curcas]
10 Hb_007547_040 0.2339915041 - - Auxin response factor 9 [Aegilops tauschii]
11 Hb_098315_110 0.2400909454 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004650_080 0.2450558036 - - -
13 Hb_130177_010 0.2470139298 - - hypothetical protein RCOM_0897890 [Ricinus communis]
14 Hb_004097_020 0.2525923684 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002232_290 0.2537390576 - - -
16 Hb_024404_010 0.2543136937 - - PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
17 Hb_000406_040 0.2548555022 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
18 Hb_001329_260 0.2556537055 - - PREDICTED: uncharacterized protein LOC105642694 isoform X1 [Jatropha curcas]
19 Hb_105427_010 0.2594702769 - - -
20 Hb_000331_610 0.2625053335 - - hypothetical protein B456_003G108600 [Gossypium raimondii]

Gene co-expression network

sample Hb_000099_220 Hb_000099_220 Hb_003768_040 Hb_003768_040 Hb_000099_220--Hb_003768_040 Hb_000857_050 Hb_000857_050 Hb_000099_220--Hb_000857_050 Hb_000590_030 Hb_000590_030 Hb_000099_220--Hb_000590_030 Hb_064885_020 Hb_064885_020 Hb_000099_220--Hb_064885_020 Hb_002450_110 Hb_002450_110 Hb_000099_220--Hb_002450_110 Hb_104812_030 Hb_104812_030 Hb_000099_220--Hb_104812_030 Hb_098315_110 Hb_098315_110 Hb_003768_040--Hb_098315_110 Hb_002311_250 Hb_002311_250 Hb_003768_040--Hb_002311_250 Hb_001946_360 Hb_001946_360 Hb_003768_040--Hb_001946_360 Hb_130177_010 Hb_130177_010 Hb_003768_040--Hb_130177_010 Hb_000431_020 Hb_000431_020 Hb_003768_040--Hb_000431_020 Hb_000832_200 Hb_000832_200 Hb_000857_050--Hb_000832_200 Hb_000101_160 Hb_000101_160 Hb_000857_050--Hb_000101_160 Hb_000857_050--Hb_003768_040 Hb_001329_260 Hb_001329_260 Hb_000857_050--Hb_001329_260 Hb_000857_050--Hb_000431_020 Hb_011063_020 Hb_011063_020 Hb_000590_030--Hb_011063_020 Hb_024404_010 Hb_024404_010 Hb_000590_030--Hb_024404_010 Hb_000160_030 Hb_000160_030 Hb_000590_030--Hb_000160_030 Hb_000590_030--Hb_002450_110 Hb_000590_030--Hb_003768_040 Hb_024505_050 Hb_024505_050 Hb_064885_020--Hb_024505_050 Hb_064885_020--Hb_024404_010 Hb_034299_040 Hb_034299_040 Hb_064885_020--Hb_034299_040 Hb_000792_070 Hb_000792_070 Hb_064885_020--Hb_000792_070 Hb_000099_210 Hb_000099_210 Hb_064885_020--Hb_000099_210 Hb_000544_040 Hb_000544_040 Hb_002450_110--Hb_000544_040 Hb_001916_130 Hb_001916_130 Hb_002450_110--Hb_001916_130 Hb_095471_010 Hb_095471_010 Hb_002450_110--Hb_095471_010 Hb_007547_040 Hb_007547_040 Hb_002450_110--Hb_007547_040 Hb_000313_320 Hb_000313_320 Hb_002450_110--Hb_000313_320 Hb_023610_010 Hb_023610_010 Hb_104812_030--Hb_023610_010 Hb_104812_030--Hb_130177_010 Hb_000815_100 Hb_000815_100 Hb_104812_030--Hb_000815_100 Hb_104812_030--Hb_007547_040 Hb_006029_020 Hb_006029_020 Hb_104812_030--Hb_006029_020 Hb_005657_010 Hb_005657_010 Hb_104812_030--Hb_005657_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.737441 0.125111 0.0641009 0.2174 1.32901 0.213346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0114137 0.107786 0.551682 0.163685 0

CAGE analysis