Hb_000792_070

Information

Type -
Description -
Location Contig792: 128147-130514
Sequence    

Annotation

kegg
ID rcu:RCOM_0085220
description Ataxin-3, putative
nr
ID XP_002527866.1
description Ataxin-3, putative [Ricinus communis]
swissprot
ID Q9M391
description Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54130 PE=2 SV=1
trembl
ID B9SPE7
description Ataxin-3, putative OS=Ricinus communis GN=RCOM_0085220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58399: 130016-130268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000792_070 0.0 - - Ataxin-3, putative [Ricinus communis]
2 Hb_000116_300 0.1462615506 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_001136_090 0.1635205881 - - Protein PNS1, putative [Ricinus communis]
4 Hb_007101_170 0.1696330958 - - hypothetical protein POPTR_0010s10490g [Populus trichocarpa]
5 Hb_001894_150 0.1722929019 - - nucleoredoxin, putative [Ricinus communis]
6 Hb_000676_110 0.1767507433 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
7 Hb_148909_010 0.1785005099 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
8 Hb_002045_130 0.1814668338 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
9 Hb_002027_120 0.1824759599 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
10 Hb_007304_110 0.1845606159 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
11 Hb_002759_280 0.1850710979 - - PREDICTED: uncharacterized protein LOC105649824 [Jatropha curcas]
12 Hb_000364_180 0.1893495203 - - PREDICTED: PI-PLC X domain-containing protein At5g67130 [Jatropha curcas]
13 Hb_007943_130 0.1897930959 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
14 Hb_000330_100 0.1903329852 - - hypothetical protein VITISV_011650 [Vitis vinifera]
15 Hb_002400_310 0.1930616248 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
16 Hb_048476_170 0.193145004 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
17 Hb_001136_100 0.1934737367 - - hypothetical protein MTR_085s0013 [Medicago truncatula]
18 Hb_004046_020 0.1936620166 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
19 Hb_176681_010 0.19384872 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
20 Hb_000206_250 0.1939858838 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]

Gene co-expression network

sample Hb_000792_070 Hb_000792_070 Hb_000116_300 Hb_000116_300 Hb_000792_070--Hb_000116_300 Hb_001136_090 Hb_001136_090 Hb_000792_070--Hb_001136_090 Hb_007101_170 Hb_007101_170 Hb_000792_070--Hb_007101_170 Hb_001894_150 Hb_001894_150 Hb_000792_070--Hb_001894_150 Hb_000676_110 Hb_000676_110 Hb_000792_070--Hb_000676_110 Hb_148909_010 Hb_148909_010 Hb_000792_070--Hb_148909_010 Hb_006076_010 Hb_006076_010 Hb_000116_300--Hb_006076_010 Hb_000041_150 Hb_000041_150 Hb_000116_300--Hb_000041_150 Hb_013405_030 Hb_013405_030 Hb_000116_300--Hb_013405_030 Hb_001221_170 Hb_001221_170 Hb_000116_300--Hb_001221_170 Hb_000997_210 Hb_000997_210 Hb_000116_300--Hb_000997_210 Hb_000041_280 Hb_000041_280 Hb_001136_090--Hb_000041_280 Hb_001136_100 Hb_001136_100 Hb_001136_090--Hb_001136_100 Hb_002367_130 Hb_002367_130 Hb_001136_090--Hb_002367_130 Hb_012132_030 Hb_012132_030 Hb_001136_090--Hb_012132_030 Hb_001502_060 Hb_001502_060 Hb_001136_090--Hb_001502_060 Hb_000072_350 Hb_000072_350 Hb_001136_090--Hb_000072_350 Hb_002400_310 Hb_002400_310 Hb_007101_170--Hb_002400_310 Hb_007101_170--Hb_000676_110 Hb_001790_020 Hb_001790_020 Hb_007101_170--Hb_001790_020 Hb_000030_040 Hb_000030_040 Hb_007101_170--Hb_000030_040 Hb_000206_250 Hb_000206_250 Hb_007101_170--Hb_000206_250 Hb_010175_020 Hb_010175_020 Hb_007101_170--Hb_010175_020 Hb_007943_130 Hb_007943_130 Hb_001894_150--Hb_007943_130 Hb_030116_020 Hb_030116_020 Hb_001894_150--Hb_030116_020 Hb_000123_210 Hb_000123_210 Hb_001894_150--Hb_000123_210 Hb_001894_150--Hb_007101_170 Hb_001894_150--Hb_000206_250 Hb_001172_010 Hb_001172_010 Hb_001894_150--Hb_001172_010 Hb_001369_420 Hb_001369_420 Hb_000676_110--Hb_001369_420 Hb_000358_150 Hb_000358_150 Hb_000676_110--Hb_000358_150 Hb_001252_080 Hb_001252_080 Hb_000676_110--Hb_001252_080 Hb_008695_180 Hb_008695_180 Hb_000676_110--Hb_008695_180 Hb_001143_160 Hb_001143_160 Hb_000676_110--Hb_001143_160 Hb_001493_030 Hb_001493_030 Hb_000676_110--Hb_001493_030 Hb_002255_050 Hb_002255_050 Hb_148909_010--Hb_002255_050 Hb_004306_080 Hb_004306_080 Hb_148909_010--Hb_004306_080 Hb_135611_010 Hb_135611_010 Hb_148909_010--Hb_135611_010 Hb_001930_010 Hb_001930_010 Hb_148909_010--Hb_001930_010 Hb_002255_070 Hb_002255_070 Hb_148909_010--Hb_002255_070 Hb_000088_130 Hb_000088_130 Hb_148909_010--Hb_000088_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.3345 1.94492 0.885931 1.58392 7.27528 1.38278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.75831 2.17342 5.99527 4.79094 1.49711

CAGE analysis