Hb_104812_030

Information

Type -
Description -
Location Contig104812: 5342-6575
Sequence    

Annotation

kegg
ID pop:POPTR_0178s00210g
description hypothetical protein
nr
ID XP_006388464.1
description hypothetical protein POPTR_0178s00210g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7E0P0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0178s00210g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01652: 5559-6941
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104812_030 0.0 - - hypothetical protein POPTR_0178s00210g [Populus trichocarpa]
2 Hb_023610_010 0.182725918 - - conserved hypothetical protein [Ricinus communis]
3 Hb_130177_010 0.2070244173 - - hypothetical protein RCOM_0897890 [Ricinus communis]
4 Hb_000815_100 0.2085488725 - - -
5 Hb_007547_040 0.2087387927 - - Auxin response factor 9 [Aegilops tauschii]
6 Hb_006029_020 0.2151856283 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1, partial [Vitis vinifera]
7 Hb_005657_010 0.2190755081 - - -
8 Hb_127003_010 0.2201157257 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
9 Hb_098315_110 0.2220049506 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003878_120 0.2222466666 transcription factor TF Family: MBF1 PREDICTED: multiprotein-bridging factor 1b-like [Elaeis guineensis]
11 Hb_000099_220 0.2227187328 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
12 Hb_032264_130 0.2248060784 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
13 Hb_000544_040 0.2258299652 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
14 Hb_000300_530 0.2260522783 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
15 Hb_000369_060 0.2294085749 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
16 Hb_000176_170 0.2297068286 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
17 Hb_000431_020 0.2309595798 - - hypothetical protein JCGZ_06801 [Jatropha curcas]
18 Hb_031862_170 0.2310362557 - - immunophilin, putative [Ricinus communis]
19 Hb_003768_040 0.2317270354 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_002232_290 0.2334416821 - - -

Gene co-expression network

sample Hb_104812_030 Hb_104812_030 Hb_023610_010 Hb_023610_010 Hb_104812_030--Hb_023610_010 Hb_130177_010 Hb_130177_010 Hb_104812_030--Hb_130177_010 Hb_000815_100 Hb_000815_100 Hb_104812_030--Hb_000815_100 Hb_007547_040 Hb_007547_040 Hb_104812_030--Hb_007547_040 Hb_006029_020 Hb_006029_020 Hb_104812_030--Hb_006029_020 Hb_005657_010 Hb_005657_010 Hb_104812_030--Hb_005657_010 Hb_000300_530 Hb_000300_530 Hb_023610_010--Hb_000300_530 Hb_004884_060 Hb_004884_060 Hb_023610_010--Hb_004884_060 Hb_003125_050 Hb_003125_050 Hb_023610_010--Hb_003125_050 Hb_098315_110 Hb_098315_110 Hb_023610_010--Hb_098315_110 Hb_095397_010 Hb_095397_010 Hb_023610_010--Hb_095397_010 Hb_004156_060 Hb_004156_060 Hb_023610_010--Hb_004156_060 Hb_130177_010--Hb_098315_110 Hb_010931_110 Hb_010931_110 Hb_130177_010--Hb_010931_110 Hb_006029_010 Hb_006029_010 Hb_130177_010--Hb_006029_010 Hb_000300_540 Hb_000300_540 Hb_130177_010--Hb_000300_540 Hb_010368_070 Hb_010368_070 Hb_130177_010--Hb_010368_070 Hb_000987_050 Hb_000987_050 Hb_130177_010--Hb_000987_050 Hb_002192_070 Hb_002192_070 Hb_000815_100--Hb_002192_070 Hb_000849_150 Hb_000849_150 Hb_000815_100--Hb_000849_150 Hb_007765_060 Hb_007765_060 Hb_000815_100--Hb_007765_060 Hb_030414_050 Hb_030414_050 Hb_000815_100--Hb_030414_050 Hb_095471_010 Hb_095471_010 Hb_000815_100--Hb_095471_010 Hb_000544_040 Hb_000544_040 Hb_000815_100--Hb_000544_040 Hb_105427_010 Hb_105427_010 Hb_007547_040--Hb_105427_010 Hb_002450_110 Hb_002450_110 Hb_007547_040--Hb_002450_110 Hb_000099_220 Hb_000099_220 Hb_007547_040--Hb_000099_220 Hb_007547_040--Hb_007765_060 Hb_007547_040--Hb_000544_040 Hb_006029_020--Hb_023610_010 Hb_006029_020--Hb_000300_530 Hb_006029_020--Hb_098315_110 Hb_000176_170 Hb_000176_170 Hb_006029_020--Hb_000176_170 Hb_003768_040 Hb_003768_040 Hb_006029_020--Hb_003768_040 Hb_006029_020--Hb_003125_050 Hb_011174_070 Hb_011174_070 Hb_005657_010--Hb_011174_070 Hb_005657_010--Hb_003125_050 Hb_001767_010 Hb_001767_010 Hb_005657_010--Hb_001767_010 Hb_001001_160 Hb_001001_160 Hb_005657_010--Hb_001001_160 Hb_011609_190 Hb_011609_190 Hb_005657_010--Hb_011609_190 Hb_003747_240 Hb_003747_240 Hb_005657_010--Hb_003747_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1608 0.799781 1.47103 0.218834 12.9226 4.08961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.547818 1.53814 8.91625 1.10033 0.488153

CAGE analysis