Hb_092650_010

Information

Type -
Description -
Location Contig92650: 10-618
Sequence    

Annotation

kegg
ID tcc:TCM_017953
description hypothetical protein
nr
ID XP_007032319.1
description Uncharacterized protein TCM_017953 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EE44
description Uncharacterized protein OS=Theobroma cacao GN=TCM_017953 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092650_010 0.0 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
2 Hb_020411_010 0.2148494018 - - phosphoprotein phosphatase, putative [Ricinus communis]
3 Hb_003944_020 0.2233746757 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
4 Hb_001221_340 0.2568700288 - - hypothetical protein EUGRSUZ_B00102 [Eucalyptus grandis]
5 Hb_000157_110 0.259720536 - - hypothetical protein Csa_6G439410 [Cucumis sativus]
6 Hb_002400_150 0.2607232987 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
7 Hb_076226_010 0.2631229643 - - hypothetical protein VITISV_030432 [Vitis vinifera]
8 Hb_082793_010 0.2658805165 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_021313_010 0.2699267025 - - hypothetical protein POPTR_0010s24380g [Populus trichocarpa]
10 Hb_003057_010 0.2716631282 - - hypothetical protein JCGZ_06666 [Jatropha curcas]
11 Hb_001341_020 0.2717036688 - - Uncharacterised protein [Bordetella pertussis]
12 Hb_000022_140 0.2750167012 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
13 Hb_000656_090 0.2760401051 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
14 Hb_016834_010 0.2775935573 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
15 Hb_001054_010 0.2790446088 - - hypothetical protein VITISV_011091 [Vitis vinifera]
16 Hb_012627_020 0.2810605051 - - PHYTOCHROME AND FLOWERING TIME 1 family protein [Populus trichocarpa]
17 Hb_001496_140 0.2845658891 - - -
18 Hb_001010_070 0.2855244693 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
19 Hb_181026_010 0.2883909512 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
20 Hb_022958_010 0.2901666109 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]

Gene co-expression network

sample Hb_092650_010 Hb_092650_010 Hb_020411_010 Hb_020411_010 Hb_092650_010--Hb_020411_010 Hb_003944_020 Hb_003944_020 Hb_092650_010--Hb_003944_020 Hb_001221_340 Hb_001221_340 Hb_092650_010--Hb_001221_340 Hb_000157_110 Hb_000157_110 Hb_092650_010--Hb_000157_110 Hb_002400_150 Hb_002400_150 Hb_092650_010--Hb_002400_150 Hb_076226_010 Hb_076226_010 Hb_092650_010--Hb_076226_010 Hb_016834_010 Hb_016834_010 Hb_020411_010--Hb_016834_010 Hb_148593_010 Hb_148593_010 Hb_020411_010--Hb_148593_010 Hb_001496_140 Hb_001496_140 Hb_020411_010--Hb_001496_140 Hb_020411_010--Hb_076226_010 Hb_172970_010 Hb_172970_010 Hb_020411_010--Hb_172970_010 Hb_001341_020 Hb_001341_020 Hb_003944_020--Hb_001341_020 Hb_005396_060 Hb_005396_060 Hb_003944_020--Hb_005396_060 Hb_000022_140 Hb_000022_140 Hb_003944_020--Hb_000022_140 Hb_004650_060 Hb_004650_060 Hb_003944_020--Hb_004650_060 Hb_066487_010 Hb_066487_010 Hb_003944_020--Hb_066487_010 Hb_001452_210 Hb_001452_210 Hb_001221_340--Hb_001452_210 Hb_007973_010 Hb_007973_010 Hb_001221_340--Hb_007973_010 Hb_002131_030 Hb_002131_030 Hb_001221_340--Hb_002131_030 Hb_002908_060 Hb_002908_060 Hb_001221_340--Hb_002908_060 Hb_000053_060 Hb_000053_060 Hb_001221_340--Hb_000053_060 Hb_001953_080 Hb_001953_080 Hb_001221_340--Hb_001953_080 Hb_158144_020 Hb_158144_020 Hb_000157_110--Hb_158144_020 Hb_000300_310 Hb_000300_310 Hb_000157_110--Hb_000300_310 Hb_001390_020 Hb_001390_020 Hb_000157_110--Hb_001390_020 Hb_000890_110 Hb_000890_110 Hb_000157_110--Hb_000890_110 Hb_000613_260 Hb_000613_260 Hb_000157_110--Hb_000613_260 Hb_000014_190 Hb_000014_190 Hb_000157_110--Hb_000014_190 Hb_004339_030 Hb_004339_030 Hb_002400_150--Hb_004339_030 Hb_003581_290 Hb_003581_290 Hb_002400_150--Hb_003581_290 Hb_000256_110 Hb_000256_110 Hb_002400_150--Hb_000256_110 Hb_003057_010 Hb_003057_010 Hb_002400_150--Hb_003057_010 Hb_029879_060 Hb_029879_060 Hb_002400_150--Hb_029879_060 Hb_000008_350 Hb_000008_350 Hb_002400_150--Hb_000008_350 Hb_069147_010 Hb_069147_010 Hb_076226_010--Hb_069147_010 Hb_033908_010 Hb_033908_010 Hb_076226_010--Hb_033908_010 Hb_001799_220 Hb_001799_220 Hb_076226_010--Hb_001799_220 Hb_030885_010 Hb_030885_010 Hb_076226_010--Hb_030885_010 Hb_087161_010 Hb_087161_010 Hb_076226_010--Hb_087161_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0425659 0 0.103312 0.265714 0.0428311 0.935975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.296314 0.155256 0.272129 1.24048 1.807

CAGE analysis