Hb_001390_020

Information

Type -
Description -
Location Contig1390: 36778-40321
Sequence    

Annotation

kegg
ID rcu:RCOM_1381350
description malate dehydrogenase, putative (EC:1.1.1.37)
nr
ID XP_002522037.1
description malate dehydrogenase, putative [Ricinus communis]
swissprot
ID P46488
description Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1
trembl
ID B9S7S1
description Malate dehydrogenase OS=Ricinus communis GN=RCOM_1381350 PE=3 SV=1
Gene Ontology
ID GO:0005773
description malate glyoxysomal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10687: 36862-40028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001390_020 0.0 - - malate dehydrogenase, putative [Ricinus communis]
2 Hb_031139_010 0.162572476 - - PREDICTED: uncharacterized protein LOC105632403 isoform X1 [Jatropha curcas]
3 Hb_000754_050 0.165746268 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
4 Hb_014361_110 0.1683460486 - - RNA binding protein, putative [Ricinus communis]
5 Hb_002232_380 0.1706109399 - - malate dehydrogenase, putative [Ricinus communis]
6 Hb_003494_030 0.1708823902 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
7 Hb_003106_170 0.171142297 - - Endonuclease III, putative [Ricinus communis]
8 Hb_036790_120 0.1740218379 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
9 Hb_001889_010 0.1748389533 transcription factor TF Family: Orphans PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2 [Jatropha curcas]
10 Hb_000803_240 0.1779758328 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
11 Hb_002217_140 0.1809412611 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
12 Hb_004502_010 0.182290811 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
13 Hb_000548_060 0.1827890786 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
14 Hb_000112_060 0.1854114975 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
15 Hb_007426_170 0.1856877238 transcription factor TF Family: TCP -
16 Hb_000977_270 0.1861182239 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
17 Hb_002027_410 0.1866200055 - - PREDICTED: protease Do-like 2, chloroplastic [Jatropha curcas]
18 Hb_010128_020 0.1869954942 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
19 Hb_000402_170 0.1877616745 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
20 Hb_027298_020 0.1938428627 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]

Gene co-expression network

sample Hb_001390_020 Hb_001390_020 Hb_031139_010 Hb_031139_010 Hb_001390_020--Hb_031139_010 Hb_000754_050 Hb_000754_050 Hb_001390_020--Hb_000754_050 Hb_014361_110 Hb_014361_110 Hb_001390_020--Hb_014361_110 Hb_002232_380 Hb_002232_380 Hb_001390_020--Hb_002232_380 Hb_003494_030 Hb_003494_030 Hb_001390_020--Hb_003494_030 Hb_003106_170 Hb_003106_170 Hb_001390_020--Hb_003106_170 Hb_031139_010--Hb_002232_380 Hb_002005_040 Hb_002005_040 Hb_031139_010--Hb_002005_040 Hb_004055_160 Hb_004055_160 Hb_031139_010--Hb_004055_160 Hb_006829_080 Hb_006829_080 Hb_031139_010--Hb_006829_080 Hb_009687_020 Hb_009687_020 Hb_031139_010--Hb_009687_020 Hb_000803_240 Hb_000803_240 Hb_031139_010--Hb_000803_240 Hb_001484_080 Hb_001484_080 Hb_000754_050--Hb_001484_080 Hb_000296_080 Hb_000296_080 Hb_000754_050--Hb_000296_080 Hb_005588_110 Hb_005588_110 Hb_000754_050--Hb_005588_110 Hb_000402_170 Hb_000402_170 Hb_000754_050--Hb_000402_170 Hb_036790_120 Hb_036790_120 Hb_000754_050--Hb_036790_120 Hb_000977_270 Hb_000977_270 Hb_000754_050--Hb_000977_270 Hb_000548_060 Hb_000548_060 Hb_014361_110--Hb_000548_060 Hb_014361_110--Hb_000803_240 Hb_000684_430 Hb_000684_430 Hb_014361_110--Hb_000684_430 Hb_018043_020 Hb_018043_020 Hb_014361_110--Hb_018043_020 Hb_001723_030 Hb_001723_030 Hb_014361_110--Hb_001723_030 Hb_005116_100 Hb_005116_100 Hb_014361_110--Hb_005116_100 Hb_002232_380--Hb_006829_080 Hb_000802_050 Hb_000802_050 Hb_002232_380--Hb_000802_050 Hb_000703_070 Hb_000703_070 Hb_002232_380--Hb_000703_070 Hb_027298_020 Hb_027298_020 Hb_002232_380--Hb_027298_020 Hb_005618_080 Hb_005618_080 Hb_002232_380--Hb_005618_080 Hb_002232_380--Hb_003494_030 Hb_002304_180 Hb_002304_180 Hb_003494_030--Hb_002304_180 Hb_000032_390 Hb_000032_390 Hb_003494_030--Hb_000032_390 Hb_003494_030--Hb_006829_080 Hb_000193_220 Hb_000193_220 Hb_003494_030--Hb_000193_220 Hb_000667_140 Hb_000667_140 Hb_003494_030--Hb_000667_140 Hb_003106_170--Hb_000977_270 Hb_007044_250 Hb_007044_250 Hb_003106_170--Hb_007044_250 Hb_003106_170--Hb_001484_080 Hb_000062_520 Hb_000062_520 Hb_003106_170--Hb_000062_520 Hb_003106_170--Hb_002304_180 Hb_003106_170--Hb_000667_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.921035 0.799963 7.8573 0.847557 1.40582 1.54761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11687 2.57026 0.271902 3.31761 17.9153

CAGE analysis