Hb_000300_310

Information

Type -
Description -
Location Contig300: 273227-275523
Sequence    

Annotation

kegg
ID bvg:104896902
description uncharacterized LOC104896902
nr
ID XP_010681990.1
description PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID A5C0T1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009754 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_310 0.0 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
2 Hb_000014_190 0.1665796242 - - Phytoene dehydrogenase, putative [Ricinus communis]
3 Hb_000963_090 0.1788649955 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
4 Hb_078477_060 0.1868494332 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
5 Hb_002226_050 0.200832987 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
6 Hb_001811_080 0.2017797432 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
7 Hb_000157_110 0.2018770255 - - hypothetical protein Csa_6G439410 [Cucumis sativus]
8 Hb_002811_190 0.203458419 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
9 Hb_023020_070 0.204396388 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000406_190 0.204657936 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
11 Hb_173808_010 0.2058993478 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
12 Hb_001080_030 0.2062069799 - - AMP dependent ligase, putative [Ricinus communis]
13 Hb_159809_090 0.2092498476 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
14 Hb_005917_030 0.210162086 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006717_080 0.2105704807 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
16 Hb_001341_020 0.2123477678 - - Uncharacterised protein [Bordetella pertussis]
17 Hb_001890_010 0.2143370059 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
18 Hb_003186_040 0.2152366645 - - PREDICTED: protein DENND6A [Jatropha curcas]
19 Hb_000934_020 0.2188105149 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
20 Hb_000640_260 0.2192476796 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000300_310 Hb_000300_310 Hb_000014_190 Hb_000014_190 Hb_000300_310--Hb_000014_190 Hb_000963_090 Hb_000963_090 Hb_000300_310--Hb_000963_090 Hb_078477_060 Hb_078477_060 Hb_000300_310--Hb_078477_060 Hb_002226_050 Hb_002226_050 Hb_000300_310--Hb_002226_050 Hb_001811_080 Hb_001811_080 Hb_000300_310--Hb_001811_080 Hb_000157_110 Hb_000157_110 Hb_000300_310--Hb_000157_110 Hb_000014_190--Hb_078477_060 Hb_003226_190 Hb_003226_190 Hb_000014_190--Hb_003226_190 Hb_001080_030 Hb_001080_030 Hb_000014_190--Hb_001080_030 Hb_009620_060 Hb_009620_060 Hb_000014_190--Hb_009620_060 Hb_000890_110 Hb_000890_110 Hb_000014_190--Hb_000890_110 Hb_000014_190--Hb_000963_090 Hb_010632_010 Hb_010632_010 Hb_000963_090--Hb_010632_010 Hb_000963_090--Hb_078477_060 Hb_000329_080 Hb_000329_080 Hb_000963_090--Hb_000329_080 Hb_002811_190 Hb_002811_190 Hb_000963_090--Hb_002811_190 Hb_000963_090--Hb_001811_080 Hb_001080_150 Hb_001080_150 Hb_000963_090--Hb_001080_150 Hb_003077_130 Hb_003077_130 Hb_078477_060--Hb_003077_130 Hb_078477_060--Hb_001080_030 Hb_078477_060--Hb_001080_150 Hb_001793_030 Hb_001793_030 Hb_078477_060--Hb_001793_030 Hb_002639_110 Hb_002639_110 Hb_002226_050--Hb_002639_110 Hb_001341_020 Hb_001341_020 Hb_002226_050--Hb_001341_020 Hb_030131_030 Hb_030131_030 Hb_002226_050--Hb_030131_030 Hb_003089_020 Hb_003089_020 Hb_002226_050--Hb_003089_020 Hb_001223_010 Hb_001223_010 Hb_002226_050--Hb_001223_010 Hb_032258_010 Hb_032258_010 Hb_002226_050--Hb_032258_010 Hb_001811_080--Hb_000329_080 Hb_001811_080--Hb_002811_190 Hb_000163_110 Hb_000163_110 Hb_001811_080--Hb_000163_110 Hb_000977_150 Hb_000977_150 Hb_001811_080--Hb_000977_150 Hb_001365_010 Hb_001365_010 Hb_001811_080--Hb_001365_010 Hb_158144_020 Hb_158144_020 Hb_000157_110--Hb_158144_020 Hb_001390_020 Hb_001390_020 Hb_000157_110--Hb_001390_020 Hb_000157_110--Hb_000890_110 Hb_000613_260 Hb_000613_260 Hb_000157_110--Hb_000613_260 Hb_000157_110--Hb_000014_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.012483 0.11159 0.172637 0.0181569 0.0125052 0.0779754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0568313 0.0223563 0.0421294 0.240682 0.610015

CAGE analysis