Hb_009620_060

Information

Type -
Description -
Location Contig9620: 35989-38763
Sequence    

Annotation

kegg
ID rcu:RCOM_1575530
description acetylornithine aminotransferase, putative (EC:2.6.1.11)
nr
ID XP_012087385.1
description PREDICTED: acetylornithine aminotransferase, mitochondrial-like [Jatropha curcas]
swissprot
ID O04866
description Acetylornithine aminotransferase, mitochondrial OS=Alnus glutinosa GN=AG118 PE=2 SV=1
trembl
ID A0A067JMH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22632 PE=3 SV=1
Gene Ontology
ID GO:0009570
description acetylornithine mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63780: 38415-38741
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009620_060 0.0 - - PREDICTED: acetylornithine aminotransferase, mitochondrial-like [Jatropha curcas]
2 Hb_003226_190 0.1404516144 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
3 Hb_000014_190 0.1488548608 - - Phytoene dehydrogenase, putative [Ricinus communis]
4 Hb_000189_520 0.156051149 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
5 Hb_002671_130 0.1645621903 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
6 Hb_000032_400 0.1718501448 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
7 Hb_007904_040 0.1838371141 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
8 Hb_000866_050 0.186160457 - - phosphate transporter [Manihot esculenta]
9 Hb_000210_080 0.1886250228 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
10 Hb_159809_090 0.1900335218 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
11 Hb_000890_110 0.1912194267 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
12 Hb_003124_120 0.1914785995 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
13 Hb_000495_080 0.1916180673 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
14 Hb_166127_030 0.1919339378 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000352_220 0.1930829468 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
16 Hb_004672_020 0.1933602833 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
17 Hb_001792_030 0.1943825329 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
18 Hb_000008_350 0.1962999016 - - -
19 Hb_026314_030 0.1968287732 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
20 Hb_001889_010 0.1970538253 transcription factor TF Family: Orphans PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2 [Jatropha curcas]

Gene co-expression network

sample Hb_009620_060 Hb_009620_060 Hb_003226_190 Hb_003226_190 Hb_009620_060--Hb_003226_190 Hb_000014_190 Hb_000014_190 Hb_009620_060--Hb_000014_190 Hb_000189_520 Hb_000189_520 Hb_009620_060--Hb_000189_520 Hb_002671_130 Hb_002671_130 Hb_009620_060--Hb_002671_130 Hb_000032_400 Hb_000032_400 Hb_009620_060--Hb_000032_400 Hb_007904_040 Hb_007904_040 Hb_009620_060--Hb_007904_040 Hb_000352_220 Hb_000352_220 Hb_003226_190--Hb_000352_220 Hb_000495_080 Hb_000495_080 Hb_003226_190--Hb_000495_080 Hb_001405_080 Hb_001405_080 Hb_003226_190--Hb_001405_080 Hb_003124_120 Hb_003124_120 Hb_003226_190--Hb_003124_120 Hb_000640_260 Hb_000640_260 Hb_003226_190--Hb_000640_260 Hb_001080_030 Hb_001080_030 Hb_003226_190--Hb_001080_030 Hb_078477_060 Hb_078477_060 Hb_000014_190--Hb_078477_060 Hb_000014_190--Hb_003226_190 Hb_000014_190--Hb_001080_030 Hb_000890_110 Hb_000890_110 Hb_000014_190--Hb_000890_110 Hb_000963_090 Hb_000963_090 Hb_000014_190--Hb_000963_090 Hb_001792_030 Hb_001792_030 Hb_000189_520--Hb_001792_030 Hb_000866_050 Hb_000866_050 Hb_000189_520--Hb_000866_050 Hb_000189_520--Hb_000032_400 Hb_001621_060 Hb_001621_060 Hb_000189_520--Hb_001621_060 Hb_003935_080 Hb_003935_080 Hb_000189_520--Hb_003935_080 Hb_011053_030 Hb_011053_030 Hb_000189_520--Hb_011053_030 Hb_000661_090 Hb_000661_090 Hb_002671_130--Hb_000661_090 Hb_002671_130--Hb_003124_120 Hb_166127_030 Hb_166127_030 Hb_002671_130--Hb_166127_030 Hb_016461_030 Hb_016461_030 Hb_002671_130--Hb_016461_030 Hb_002671_130--Hb_000640_260 Hb_000816_200 Hb_000816_200 Hb_002671_130--Hb_000816_200 Hb_000032_400--Hb_011053_030 Hb_003941_030 Hb_003941_030 Hb_000032_400--Hb_003941_030 Hb_026314_030 Hb_026314_030 Hb_000032_400--Hb_026314_030 Hb_000684_280 Hb_000684_280 Hb_000032_400--Hb_000684_280 Hb_000175_050 Hb_000175_050 Hb_000032_400--Hb_000175_050 Hb_007904_040--Hb_000175_050 Hb_000032_140 Hb_000032_140 Hb_007904_040--Hb_000032_140 Hb_001842_020 Hb_001842_020 Hb_007904_040--Hb_001842_020 Hb_004672_020 Hb_004672_020 Hb_007904_040--Hb_004672_020 Hb_007904_040--Hb_000032_400 Hb_002783_150 Hb_002783_150 Hb_007904_040--Hb_002783_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.227195 1.25354 2.11604 1.72625 0.036197 0.623492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.35403 0.639405 0.748201 1.81076 9.02837

CAGE analysis