Hb_030885_010

Information

Type -
Description -
Location Contig30885: 1571-3985
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32605: 2716-2931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030885_010 0.0 - - -
2 Hb_009848_060 0.1479716313 - - unknown [Glycine max]
3 Hb_010129_020 0.1652967096 - - cytochrome P450, putative [Ricinus communis]
4 Hb_001856_280 0.1752197478 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
5 Hb_029727_010 0.1760786308 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_125116_020 0.1770688813 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X5 [Populus euphratica]
7 Hb_002529_070 0.1772304685 - - PREDICTED: putative late blight resistance protein homolog R1B-19 [Pyrus x bretschneideri]
8 Hb_007885_110 0.1836799535 - - PREDICTED: uncharacterized protein LOC104109376 [Nicotiana tomentosiformis]
9 Hb_001571_020 0.1859793589 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
10 Hb_004052_060 0.1873195722 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
11 Hb_008055_030 0.1889673882 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
12 Hb_087161_010 0.1891829362 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_008144_010 0.1923207139 - - hypothetical protein VITISV_015004 [Vitis vinifera]
14 Hb_002016_130 0.1933311786 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
15 Hb_000574_030 0.1934936565 desease resistance Gene Name: Glyco_hydro_38 Disease resistance protein RPS5, putative [Ricinus communis]
16 Hb_000169_100 0.1980518115 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
17 Hb_005920_030 0.198897087 - - putative polyprotein [Oryza sativa Japonica Group]
18 Hb_001005_040 0.1989719872 - - -
19 Hb_005843_060 0.2013322147 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 [Nelumbo nucifera]
20 Hb_001880_020 0.20251421 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]

Gene co-expression network

sample Hb_030885_010 Hb_030885_010 Hb_009848_060 Hb_009848_060 Hb_030885_010--Hb_009848_060 Hb_010129_020 Hb_010129_020 Hb_030885_010--Hb_010129_020 Hb_001856_280 Hb_001856_280 Hb_030885_010--Hb_001856_280 Hb_029727_010 Hb_029727_010 Hb_030885_010--Hb_029727_010 Hb_125116_020 Hb_125116_020 Hb_030885_010--Hb_125116_020 Hb_002529_070 Hb_002529_070 Hb_030885_010--Hb_002529_070 Hb_000260_730 Hb_000260_730 Hb_009848_060--Hb_000260_730 Hb_002016_130 Hb_002016_130 Hb_009848_060--Hb_002016_130 Hb_004052_060 Hb_004052_060 Hb_009848_060--Hb_004052_060 Hb_009848_050 Hb_009848_050 Hb_009848_060--Hb_009848_050 Hb_000574_030 Hb_000574_030 Hb_009848_060--Hb_000574_030 Hb_188163_010 Hb_188163_010 Hb_010129_020--Hb_188163_010 Hb_004129_180 Hb_004129_180 Hb_010129_020--Hb_004129_180 Hb_097933_010 Hb_097933_010 Hb_010129_020--Hb_097933_010 Hb_000906_120 Hb_000906_120 Hb_010129_020--Hb_000906_120 Hb_001880_020 Hb_001880_020 Hb_010129_020--Hb_001880_020 Hb_002188_050 Hb_002188_050 Hb_010129_020--Hb_002188_050 Hb_043792_030 Hb_043792_030 Hb_001856_280--Hb_043792_030 Hb_019654_170 Hb_019654_170 Hb_001856_280--Hb_019654_170 Hb_000346_050 Hb_000346_050 Hb_001856_280--Hb_000346_050 Hb_005920_030 Hb_005920_030 Hb_001856_280--Hb_005920_030 Hb_020831_070 Hb_020831_070 Hb_001856_280--Hb_020831_070 Hb_001856_280--Hb_001880_020 Hb_000169_100 Hb_000169_100 Hb_029727_010--Hb_000169_100 Hb_001005_040 Hb_001005_040 Hb_029727_010--Hb_001005_040 Hb_017225_030 Hb_017225_030 Hb_029727_010--Hb_017225_030 Hb_001288_050 Hb_001288_050 Hb_029727_010--Hb_001288_050 Hb_029727_010--Hb_000260_730 Hb_002631_270 Hb_002631_270 Hb_029727_010--Hb_002631_270 Hb_005843_060 Hb_005843_060 Hb_125116_020--Hb_005843_060 Hb_003462_170 Hb_003462_170 Hb_125116_020--Hb_003462_170 Hb_010964_030 Hb_010964_030 Hb_125116_020--Hb_010964_030 Hb_001981_020 Hb_001981_020 Hb_125116_020--Hb_001981_020 Hb_167457_010 Hb_167457_010 Hb_125116_020--Hb_167457_010 Hb_125116_020--Hb_004052_060 Hb_002529_070--Hb_002016_130 Hb_002529_070--Hb_009848_060 Hb_002529_070--Hb_001005_040 Hb_170878_020 Hb_170878_020 Hb_002529_070--Hb_170878_020 Hb_002529_070--Hb_004052_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0749077 0.271857 0.279308 0.385718 0 0.110829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136911 0 0 3.71542 6.41685

CAGE analysis