Hb_170878_020

Information

Type -
Description -
Location Contig170878: 14212-14469
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15956: 14396-14768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170878_020 0.0 - - -
2 Hb_000644_020 0.1050024581 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
3 Hb_040245_010 0.1384410426 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
4 Hb_006455_020 0.1388956085 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
5 Hb_003462_170 0.142362713 - - unnamed protein product [Vitis vinifera]
6 Hb_003073_030 0.1482620568 - - conserved hypothetical protein [Ricinus communis]
7 Hb_027654_010 0.1482733341 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
8 Hb_001793_040 0.1525040442 - - hypothetical protein VITISV_006810 [Vitis vinifera]
9 Hb_001699_020 0.1579434152 - - hypothetical protein L484_026849 [Morus notabilis]
10 Hb_020831_070 0.1595763471 - - hypothetical protein VITISV_027174 [Vitis vinifera]
11 Hb_000415_080 0.1620555909 - - -
12 Hb_000907_130 0.1658267842 - - -
13 Hb_000199_090 0.1682774783 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
14 Hb_077151_010 0.1717741974 - - ankyrin repeat protein [Bruguiera gymnorhiza]
15 Hb_002973_120 0.173729241 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
16 Hb_032016_010 0.1740369799 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
17 Hb_003030_050 0.1740693717 - - -
18 Hb_010381_080 0.1741152211 - - cytochrome P450, putative [Ricinus communis]
19 Hb_014510_030 0.1750721103 - - hypothetical protein VITISV_027576 [Vitis vinifera]
20 Hb_002835_050 0.1781006217 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]

Gene co-expression network

sample Hb_170878_020 Hb_170878_020 Hb_000644_020 Hb_000644_020 Hb_170878_020--Hb_000644_020 Hb_040245_010 Hb_040245_010 Hb_170878_020--Hb_040245_010 Hb_006455_020 Hb_006455_020 Hb_170878_020--Hb_006455_020 Hb_003462_170 Hb_003462_170 Hb_170878_020--Hb_003462_170 Hb_003073_030 Hb_003073_030 Hb_170878_020--Hb_003073_030 Hb_027654_010 Hb_027654_010 Hb_170878_020--Hb_027654_010 Hb_032016_010 Hb_032016_010 Hb_000644_020--Hb_032016_010 Hb_000567_270 Hb_000567_270 Hb_000644_020--Hb_000567_270 Hb_000644_020--Hb_040245_010 Hb_000644_020--Hb_006455_020 Hb_000644_020--Hb_003073_030 Hb_000415_080 Hb_000415_080 Hb_040245_010--Hb_000415_080 Hb_040245_010--Hb_003073_030 Hb_014510_030 Hb_014510_030 Hb_040245_010--Hb_014510_030 Hb_000199_090 Hb_000199_090 Hb_040245_010--Hb_000199_090 Hb_000627_110 Hb_000627_110 Hb_040245_010--Hb_000627_110 Hb_040245_010--Hb_032016_010 Hb_020831_070 Hb_020831_070 Hb_006455_020--Hb_020831_070 Hb_000476_030 Hb_000476_030 Hb_006455_020--Hb_000476_030 Hb_005678_030 Hb_005678_030 Hb_006455_020--Hb_005678_030 Hb_000522_030 Hb_000522_030 Hb_006455_020--Hb_000522_030 Hb_007533_050 Hb_007533_050 Hb_006455_020--Hb_007533_050 Hb_001699_020 Hb_001699_020 Hb_003462_170--Hb_001699_020 Hb_005843_060 Hb_005843_060 Hb_003462_170--Hb_005843_060 Hb_125116_020 Hb_125116_020 Hb_003462_170--Hb_125116_020 Hb_003462_170--Hb_006455_020 Hb_001981_020 Hb_001981_020 Hb_003462_170--Hb_001981_020 Hb_003462_170--Hb_000644_020 Hb_003073_030--Hb_014510_030 Hb_003073_030--Hb_000415_080 Hb_003073_030--Hb_000199_090 Hb_077151_010 Hb_077151_010 Hb_003073_030--Hb_077151_010 Hb_003073_030--Hb_000627_110 Hb_015817_010 Hb_015817_010 Hb_027654_010--Hb_015817_010 Hb_043935_010 Hb_043935_010 Hb_027654_010--Hb_043935_010 Hb_010381_080 Hb_010381_080 Hb_027654_010--Hb_010381_080 Hb_006147_020 Hb_006147_020 Hb_027654_010--Hb_006147_020 Hb_004392_030 Hb_004392_030 Hb_027654_010--Hb_004392_030 Hb_027654_010--Hb_001699_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.95712 14.2627 13.8553 0.257811 2.32919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.899556 0 28.6546 116.786

CAGE analysis