Hb_002529_070

Information

Type -
Description -
Location Contig2529: 127001-128420
Sequence    

Annotation

kegg
ID pxb:103935796
description putative late blight resistance protein homolog R1B-19
nr
ID XP_009363395.1
description PREDICTED: putative late blight resistance protein homolog R1B-19 [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID A0A072TW71
description Heavy metal transport/detoxification superfamily protein OS=Medicago truncatula GN=MTR_8g098915 PE=4 SV=1
Gene Ontology
ID GO:0046872
description late blight resistance protein homolog r1b-19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002529_070 0.0 - - PREDICTED: putative late blight resistance protein homolog R1B-19 [Pyrus x bretschneideri]
2 Hb_002016_130 0.1632648506 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
3 Hb_009848_060 0.1761269112 - - unknown [Glycine max]
4 Hb_030885_010 0.1772304685 - - -
5 Hb_001005_040 0.1788930722 - - -
6 Hb_170878_020 0.180354215 - - -
7 Hb_004052_060 0.1817273307 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
8 Hb_029727_010 0.1824039375 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_004487_060 0.1825351662 - - cytochrome P450, putative [Ricinus communis]
10 Hb_021428_010 0.1845457759 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
11 Hb_002874_030 0.1871500513 - - hypothetical protein JCGZ_07001 [Jatropha curcas]
12 Hb_035651_010 0.1878060716 - - receptor-kinase, putative [Ricinus communis]
13 Hb_006111_040 0.188108791 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
14 Hb_000318_400 0.1903949348 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003462_170 0.1921708084 - - unnamed protein product [Vitis vinifera]
16 Hb_040473_010 0.1943906944 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
17 Hb_005843_060 0.1974236465 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 [Nelumbo nucifera]
18 Hb_006455_020 0.1982920924 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
19 Hb_001856_280 0.2004355648 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
20 Hb_020831_070 0.2010357349 - - hypothetical protein VITISV_027174 [Vitis vinifera]

Gene co-expression network

sample Hb_002529_070 Hb_002529_070 Hb_002016_130 Hb_002016_130 Hb_002529_070--Hb_002016_130 Hb_009848_060 Hb_009848_060 Hb_002529_070--Hb_009848_060 Hb_030885_010 Hb_030885_010 Hb_002529_070--Hb_030885_010 Hb_001005_040 Hb_001005_040 Hb_002529_070--Hb_001005_040 Hb_170878_020 Hb_170878_020 Hb_002529_070--Hb_170878_020 Hb_004052_060 Hb_004052_060 Hb_002529_070--Hb_004052_060 Hb_002016_130--Hb_001005_040 Hb_000574_030 Hb_000574_030 Hb_002016_130--Hb_000574_030 Hb_004487_060 Hb_004487_060 Hb_002016_130--Hb_004487_060 Hb_001288_050 Hb_001288_050 Hb_002016_130--Hb_001288_050 Hb_000416_010 Hb_000416_010 Hb_002016_130--Hb_000416_010 Hb_001301_010 Hb_001301_010 Hb_002016_130--Hb_001301_010 Hb_000260_730 Hb_000260_730 Hb_009848_060--Hb_000260_730 Hb_009848_060--Hb_002016_130 Hb_009848_060--Hb_030885_010 Hb_009848_060--Hb_004052_060 Hb_009848_050 Hb_009848_050 Hb_009848_060--Hb_009848_050 Hb_009848_060--Hb_000574_030 Hb_010129_020 Hb_010129_020 Hb_030885_010--Hb_010129_020 Hb_001856_280 Hb_001856_280 Hb_030885_010--Hb_001856_280 Hb_029727_010 Hb_029727_010 Hb_030885_010--Hb_029727_010 Hb_125116_020 Hb_125116_020 Hb_030885_010--Hb_125116_020 Hb_001005_040--Hb_001288_050 Hb_001005_040--Hb_029727_010 Hb_000567_150 Hb_000567_150 Hb_001005_040--Hb_000567_150 Hb_001005_040--Hb_000416_010 Hb_001109_170 Hb_001109_170 Hb_001005_040--Hb_001109_170 Hb_000644_020 Hb_000644_020 Hb_170878_020--Hb_000644_020 Hb_040245_010 Hb_040245_010 Hb_170878_020--Hb_040245_010 Hb_006455_020 Hb_006455_020 Hb_170878_020--Hb_006455_020 Hb_003462_170 Hb_003462_170 Hb_170878_020--Hb_003462_170 Hb_003073_030 Hb_003073_030 Hb_170878_020--Hb_003073_030 Hb_027654_010 Hb_027654_010 Hb_170878_020--Hb_027654_010 Hb_004052_060--Hb_125116_020 Hb_095835_010 Hb_095835_010 Hb_004052_060--Hb_095835_010 Hb_004052_060--Hb_010129_020 Hb_005843_060 Hb_005843_060 Hb_004052_060--Hb_005843_060 Hb_004052_060--Hb_029727_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.40026 1.59539 1.5458 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.547818 0.492204 0 6.50192 14.6446

CAGE analysis