Hb_016834_010

Information

Type -
Description -
Location Contig16834: 4-1008
Sequence    

Annotation

kegg
ID sot:102582478
description uncharacterized LOC102582478
nr
ID XP_009760879.1
description PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID Q948N8
description TdcA1-ORF1-ORF2 protein (Fragment) OS=Daucus carota GN=TdcA1-ORF1-ORF2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016834_010 0.0 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
2 Hb_020411_010 0.2041275612 - - phosphoprotein phosphatase, putative [Ricinus communis]
3 Hb_002456_020 0.2581511392 - - Ankyrin repeat family protein [Theobroma cacao]
4 Hb_000072_040 0.2752473243 - - -
5 Hb_001496_140 0.2762962197 - - -
6 Hb_092650_010 0.2775935573 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
7 Hb_002260_260 0.298591992 - - hypothetical protein VITISV_037667 [Vitis vinifera]
8 Hb_001511_230 0.3140874163 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
9 Hb_010810_110 0.315462467 - - PREDICTED: LOW QUALITY PROTEIN: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
10 Hb_001086_030 0.3157118006 - - Disease resistance protein RPS5, putative [Ricinus communis]
11 Hb_002311_270 0.3165258025 - - PREDICTED: WD repeat-containing protein 43-like [Malus domestica]
12 Hb_001496_020 0.318955368 - - putative WRKY transcription factor 19 -like protein [Gossypium arboreum]
13 Hb_012650_010 0.3195631339 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
14 Hb_182680_010 0.3242541086 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
15 Hb_001054_010 0.3249134871 - - hypothetical protein VITISV_011091 [Vitis vinifera]
16 Hb_000038_050 0.326371411 - - -
17 Hb_000735_170 0.3287940234 - - hypothetical protein JCGZ_15146 [Jatropha curcas]
18 Hb_001832_100 0.3299862062 - - -
19 Hb_003297_040 0.3307982661 - - Disease resistance protein RPM1, putative [Ricinus communis]
20 Hb_060411_010 0.3332863602 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]

Gene co-expression network

sample Hb_016834_010 Hb_016834_010 Hb_020411_010 Hb_020411_010 Hb_016834_010--Hb_020411_010 Hb_002456_020 Hb_002456_020 Hb_016834_010--Hb_002456_020 Hb_000072_040 Hb_000072_040 Hb_016834_010--Hb_000072_040 Hb_001496_140 Hb_001496_140 Hb_016834_010--Hb_001496_140 Hb_092650_010 Hb_092650_010 Hb_016834_010--Hb_092650_010 Hb_002260_260 Hb_002260_260 Hb_016834_010--Hb_002260_260 Hb_020411_010--Hb_092650_010 Hb_148593_010 Hb_148593_010 Hb_020411_010--Hb_148593_010 Hb_020411_010--Hb_001496_140 Hb_076226_010 Hb_076226_010 Hb_020411_010--Hb_076226_010 Hb_172970_010 Hb_172970_010 Hb_020411_010--Hb_172970_010 Hb_002311_270 Hb_002311_270 Hb_002456_020--Hb_002311_270 Hb_012650_010 Hb_012650_010 Hb_002456_020--Hb_012650_010 Hb_001652_070 Hb_001652_070 Hb_002456_020--Hb_001652_070 Hb_000117_150 Hb_000117_150 Hb_002456_020--Hb_000117_150 Hb_001832_100 Hb_001832_100 Hb_002456_020--Hb_001832_100 Hb_004228_040 Hb_004228_040 Hb_000072_040--Hb_004228_040 Hb_001496_020 Hb_001496_020 Hb_000072_040--Hb_001496_020 Hb_133191_010 Hb_133191_010 Hb_000072_040--Hb_133191_010 Hb_014988_030 Hb_014988_030 Hb_000072_040--Hb_014988_030 Hb_031474_020 Hb_031474_020 Hb_000072_040--Hb_031474_020 Hb_000832_350 Hb_000832_350 Hb_001496_140--Hb_000832_350 Hb_001799_220 Hb_001799_220 Hb_001496_140--Hb_001799_220 Hb_002123_030 Hb_002123_030 Hb_001496_140--Hb_002123_030 Hb_030370_010 Hb_030370_010 Hb_001496_140--Hb_030370_010 Hb_000038_050 Hb_000038_050 Hb_001496_140--Hb_000038_050 Hb_003944_020 Hb_003944_020 Hb_092650_010--Hb_003944_020 Hb_001221_340 Hb_001221_340 Hb_092650_010--Hb_001221_340 Hb_000157_110 Hb_000157_110 Hb_092650_010--Hb_000157_110 Hb_002400_150 Hb_002400_150 Hb_092650_010--Hb_002400_150 Hb_092650_010--Hb_076226_010 Hb_002260_260--Hb_000038_050 Hb_002260_260--Hb_001496_140 Hb_002260_260--Hb_001496_020 Hb_028751_020 Hb_028751_020 Hb_002260_260--Hb_028751_020 Hb_002260_260--Hb_020411_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.136342 0 0.056689 0.0880807 0.137714 0.671088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.160516 0 0 1.32559 0.918686

CAGE analysis