Hb_002260_260

Information

Type -
Description -
Location Contig2260: 350001-355176
Sequence    

Annotation

kegg
ID pmum:103322601
description uncharacterized LOC103322601
nr
ID CAN74658.1
description hypothetical protein VITISV_037667 [Vitis vinifera]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A5BJ20
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037667 PE=4 SV=1
Gene Ontology
ID GO:0003676
description hypothetical protein VITISV_037667

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002260_260 0.0 - - hypothetical protein VITISV_037667 [Vitis vinifera]
2 Hb_000038_050 0.1697712888 - - -
3 Hb_001496_140 0.2936950829 - - -
4 Hb_016834_010 0.298591992 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
5 Hb_001496_020 0.3080069699 - - putative WRKY transcription factor 19 -like protein [Gossypium arboreum]
6 Hb_028751_020 0.3220694886 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
7 Hb_020411_010 0.3286902698 - - phosphoprotein phosphatase, putative [Ricinus communis]
8 Hb_023161_030 0.3384162992 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
9 Hb_000072_040 0.3388441638 - - -
10 Hb_060411_010 0.3416909426 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
11 Hb_032705_020 0.3533904992 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
12 Hb_033286_020 0.3557699229 - - -
13 Hb_012305_080 0.3687353597 - - -
14 Hb_000832_350 0.373540681 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_003297_040 0.3812527703 - - Disease resistance protein RPM1, putative [Ricinus communis]
16 Hb_189003_030 0.3933347668 - - -
17 Hb_002419_030 0.3941332667 - - -
18 Hb_001496_030 0.395273847 - - hypothetical protein CISIN_1g0170981mg, partial [Citrus sinensis]
19 Hb_006856_020 0.396871364 - - -
20 Hb_001587_010 0.397326258 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]

Gene co-expression network

sample Hb_002260_260 Hb_002260_260 Hb_000038_050 Hb_000038_050 Hb_002260_260--Hb_000038_050 Hb_001496_140 Hb_001496_140 Hb_002260_260--Hb_001496_140 Hb_016834_010 Hb_016834_010 Hb_002260_260--Hb_016834_010 Hb_001496_020 Hb_001496_020 Hb_002260_260--Hb_001496_020 Hb_028751_020 Hb_028751_020 Hb_002260_260--Hb_028751_020 Hb_020411_010 Hb_020411_010 Hb_002260_260--Hb_020411_010 Hb_023161_030 Hb_023161_030 Hb_000038_050--Hb_023161_030 Hb_000038_050--Hb_001496_140 Hb_189003_030 Hb_189003_030 Hb_000038_050--Hb_189003_030 Hb_017687_010 Hb_017687_010 Hb_000038_050--Hb_017687_010 Hb_000038_050--Hb_028751_020 Hb_000832_350 Hb_000832_350 Hb_001496_140--Hb_000832_350 Hb_001799_220 Hb_001799_220 Hb_001496_140--Hb_001799_220 Hb_002123_030 Hb_002123_030 Hb_001496_140--Hb_002123_030 Hb_001496_140--Hb_016834_010 Hb_030370_010 Hb_030370_010 Hb_001496_140--Hb_030370_010 Hb_016834_010--Hb_020411_010 Hb_002456_020 Hb_002456_020 Hb_016834_010--Hb_002456_020 Hb_000072_040 Hb_000072_040 Hb_016834_010--Hb_000072_040 Hb_092650_010 Hb_092650_010 Hb_016834_010--Hb_092650_010 Hb_003297_040 Hb_003297_040 Hb_001496_020--Hb_003297_040 Hb_006856_020 Hb_006856_020 Hb_001496_020--Hb_006856_020 Hb_002003_120 Hb_002003_120 Hb_001496_020--Hb_002003_120 Hb_001496_020--Hb_000832_350 Hb_001496_020--Hb_000072_040 Hb_033286_020 Hb_033286_020 Hb_001496_020--Hb_033286_020 Hb_060411_010 Hb_060411_010 Hb_028751_020--Hb_060411_010 Hb_003057_010 Hb_003057_010 Hb_028751_020--Hb_003057_010 Hb_000631_070 Hb_000631_070 Hb_028751_020--Hb_000631_070 Hb_009898_020 Hb_009898_020 Hb_028751_020--Hb_009898_020 Hb_000236_450 Hb_000236_450 Hb_028751_020--Hb_000236_450 Hb_003813_160 Hb_003813_160 Hb_028751_020--Hb_003813_160 Hb_020411_010--Hb_092650_010 Hb_148593_010 Hb_148593_010 Hb_020411_010--Hb_148593_010 Hb_020411_010--Hb_001496_140 Hb_076226_010 Hb_076226_010 Hb_020411_010--Hb_076226_010 Hb_172970_010 Hb_172970_010 Hb_020411_010--Hb_172970_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0118198 0.0111664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00953591 0 0 0.0237673 0.0161069

CAGE analysis