Hb_060411_010

Information

Type -
Description -
Location Contig60411: 77-658
Sequence    

Annotation

kegg
ID vvi:100246093
description uncharacterized LOC100246093
nr
ID XP_010660145.1
description PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID U5GGB3
description Putative disease resistance gene NBS-LRR family protein OS=Populus trichocarpa GN=POPTR_0005s04430g PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060411_010 0.0 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
2 Hb_028751_020 0.1801276684 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
3 Hb_000631_070 0.2255986097 transcription factor TF Family: C2H2 PREDICTED: histone deacetylase 5 [Jatropha curcas]
4 Hb_002419_030 0.2535190106 - - -
5 Hb_001258_060 0.2560581535 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
6 Hb_001452_210 0.2590282448 - - molybdopterin biosynthesis CNX1 protein [Arabidopsis thaliana]
7 Hb_002407_080 0.2606387891 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
8 Hb_002289_090 0.2614361799 - - cytoplasmic tRNA 2-thiolation protein 2-like [Scleropages formosus]
9 Hb_014894_010 0.2614641672 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
10 Hb_039145_010 0.2628681999 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
11 Hb_009898_020 0.2638139169 - - hypothetical protein JCGZ_23951 [Jatropha curcas]
12 Hb_003057_010 0.2665673037 - - hypothetical protein JCGZ_06666 [Jatropha curcas]
13 Hb_001246_030 0.2689511788 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
14 Hb_002233_040 0.2721291787 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
15 Hb_002304_070 0.272207721 - - -
16 Hb_007763_030 0.2738847337 - - PREDICTED: uncharacterized protein LOC105638154 [Jatropha curcas]
17 Hb_012180_020 0.275193709 - - hypothetical protein POPTR_0001s15100g [Populus trichocarpa]
18 Hb_052764_110 0.276205839 - - PREDICTED: quinone oxidoreductase PIG3 isoform X1 [Jatropha curcas]
19 Hb_000417_320 0.2769962169 - - hypothetical protein CICLE_v10000333mg [Citrus clementina]
20 Hb_002005_100 0.2774001946 - - -

Gene co-expression network

sample Hb_060411_010 Hb_060411_010 Hb_028751_020 Hb_028751_020 Hb_060411_010--Hb_028751_020 Hb_000631_070 Hb_000631_070 Hb_060411_010--Hb_000631_070 Hb_002419_030 Hb_002419_030 Hb_060411_010--Hb_002419_030 Hb_001258_060 Hb_001258_060 Hb_060411_010--Hb_001258_060 Hb_001452_210 Hb_001452_210 Hb_060411_010--Hb_001452_210 Hb_002407_080 Hb_002407_080 Hb_060411_010--Hb_002407_080 Hb_003057_010 Hb_003057_010 Hb_028751_020--Hb_003057_010 Hb_028751_020--Hb_000631_070 Hb_009898_020 Hb_009898_020 Hb_028751_020--Hb_009898_020 Hb_000236_450 Hb_000236_450 Hb_028751_020--Hb_000236_450 Hb_003813_160 Hb_003813_160 Hb_028751_020--Hb_003813_160 Hb_042202_030 Hb_042202_030 Hb_000631_070--Hb_042202_030 Hb_004411_060 Hb_004411_060 Hb_000631_070--Hb_004411_060 Hb_002338_050 Hb_002338_050 Hb_000631_070--Hb_002338_050 Hb_002304_070 Hb_002304_070 Hb_000631_070--Hb_002304_070 Hb_019053_030 Hb_019053_030 Hb_000631_070--Hb_019053_030 Hb_002814_070 Hb_002814_070 Hb_000631_070--Hb_002814_070 Hb_001010_070 Hb_001010_070 Hb_002419_030--Hb_001010_070 Hb_009270_010 Hb_009270_010 Hb_002419_030--Hb_009270_010 Hb_000136_040 Hb_000136_040 Hb_002419_030--Hb_000136_040 Hb_004448_090 Hb_004448_090 Hb_002419_030--Hb_004448_090 Hb_000470_080 Hb_000470_080 Hb_002419_030--Hb_000470_080 Hb_003206_020 Hb_003206_020 Hb_002419_030--Hb_003206_020 Hb_014894_010 Hb_014894_010 Hb_001258_060--Hb_014894_010 Hb_004242_190 Hb_004242_190 Hb_001258_060--Hb_004242_190 Hb_008864_090 Hb_008864_090 Hb_001258_060--Hb_008864_090 Hb_001246_030 Hb_001246_030 Hb_001258_060--Hb_001246_030 Hb_000805_320 Hb_000805_320 Hb_001258_060--Hb_000805_320 Hb_007763_030 Hb_007763_030 Hb_001258_060--Hb_007763_030 Hb_052764_110 Hb_052764_110 Hb_001452_210--Hb_052764_110 Hb_098315_080 Hb_098315_080 Hb_001452_210--Hb_098315_080 Hb_000227_070 Hb_000227_070 Hb_001452_210--Hb_000227_070 Hb_179924_010 Hb_179924_010 Hb_001452_210--Hb_179924_010 Hb_003098_080 Hb_003098_080 Hb_001452_210--Hb_003098_080 Hb_001221_340 Hb_001221_340 Hb_001452_210--Hb_001221_340 Hb_002407_080--Hb_004242_190 Hb_003073_180 Hb_003073_180 Hb_002407_080--Hb_003073_180 Hb_002972_020 Hb_002972_020 Hb_002407_080--Hb_002972_020 Hb_002407_080--Hb_001258_060 Hb_000009_620 Hb_000009_620 Hb_002407_080--Hb_000009_620 Hb_005273_040 Hb_005273_040 Hb_002407_080--Hb_005273_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.503835 0.209088 0.0368968 0.0508208 0.619401 0.940643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.374 0.498358 0.433797 3.65155 1.43942

CAGE analysis