Hb_003813_160

Information

Type -
Description -
Location Contig3813: 106272-109930
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003813_160 0.0 - - -
2 Hb_001233_040 0.2705337712 - - PREDICTED: uncharacterized protein LOC105775263 [Gossypium raimondii]
3 Hb_001604_050 0.2707014785 - - PREDICTED: uncharacterized protein LOC105639208 [Jatropha curcas]
4 Hb_033661_010 0.2754734314 - - PREDICTED: uncharacterized protein LOC105852393, partial [Cicer arietinum]
5 Hb_184403_020 0.2807876863 - - PREDICTED: pre-rRNA-processing protein ESF2 [Vitis vinifera]
6 Hb_000753_190 0.2822831271 - - PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]
7 Hb_011249_050 0.2859686507 - - -
8 Hb_028751_020 0.2865572585 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
9 Hb_068804_040 0.2868780741 - - -
10 Hb_002301_180 0.2905234268 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
11 Hb_065866_010 0.2916425849 - - PREDICTED: hydroxyacyl-thioester dehydratase type 2, mitochondrial [Fragaria vesca subsp. vesca]
12 Hb_000703_270 0.291702584 - - hypothetical protein B456_012G039600 [Gossypium raimondii]
13 Hb_000376_160 0.2956575177 - - -
14 Hb_057207_010 0.2956856332 - - hypothetical protein F383_17010 [Gossypium arboreum]
15 Hb_011431_010 0.2988641845 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_005501_050 0.300348058 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_005657_020 0.3007029729 - - -
18 Hb_006054_050 0.3008597402 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
19 Hb_000915_160 0.3049263306 - - PREDICTED: histone H1 [Jatropha curcas]
20 Hb_004097_050 0.3054648974 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_003813_160 Hb_003813_160 Hb_001233_040 Hb_001233_040 Hb_003813_160--Hb_001233_040 Hb_001604_050 Hb_001604_050 Hb_003813_160--Hb_001604_050 Hb_033661_010 Hb_033661_010 Hb_003813_160--Hb_033661_010 Hb_184403_020 Hb_184403_020 Hb_003813_160--Hb_184403_020 Hb_000753_190 Hb_000753_190 Hb_003813_160--Hb_000753_190 Hb_011249_050 Hb_011249_050 Hb_003813_160--Hb_011249_050 Hb_035935_010 Hb_035935_010 Hb_001233_040--Hb_035935_010 Hb_001733_060 Hb_001733_060 Hb_001233_040--Hb_001733_060 Hb_001233_040--Hb_033661_010 Hb_000661_080 Hb_000661_080 Hb_001233_040--Hb_000661_080 Hb_057207_010 Hb_057207_010 Hb_001233_040--Hb_057207_010 Hb_001604_050--Hb_184403_020 Hb_000375_310 Hb_000375_310 Hb_001604_050--Hb_000375_310 Hb_171469_010 Hb_171469_010 Hb_001604_050--Hb_171469_010 Hb_001950_120 Hb_001950_120 Hb_001604_050--Hb_001950_120 Hb_101133_020 Hb_101133_020 Hb_001604_050--Hb_101133_020 Hb_000449_040 Hb_000449_040 Hb_001604_050--Hb_000449_040 Hb_001277_230 Hb_001277_230 Hb_033661_010--Hb_001277_230 Hb_002304_020 Hb_002304_020 Hb_033661_010--Hb_002304_020 Hb_080085_010 Hb_080085_010 Hb_033661_010--Hb_080085_010 Hb_103362_010 Hb_103362_010 Hb_033661_010--Hb_103362_010 Hb_158560_010 Hb_158560_010 Hb_033661_010--Hb_158560_010 Hb_004785_080 Hb_004785_080 Hb_033661_010--Hb_004785_080 Hb_071130_030 Hb_071130_030 Hb_184403_020--Hb_071130_030 Hb_001117_090 Hb_001117_090 Hb_184403_020--Hb_001117_090 Hb_003581_100 Hb_003581_100 Hb_184403_020--Hb_003581_100 Hb_000300_610 Hb_000300_610 Hb_184403_020--Hb_000300_610 Hb_001951_140 Hb_001951_140 Hb_184403_020--Hb_001951_140 Hb_002685_190 Hb_002685_190 Hb_184403_020--Hb_002685_190 Hb_023711_010 Hb_023711_010 Hb_000753_190--Hb_023711_010 Hb_003638_070 Hb_003638_070 Hb_000753_190--Hb_003638_070 Hb_007290_080 Hb_007290_080 Hb_000753_190--Hb_007290_080 Hb_000010_260 Hb_000010_260 Hb_000753_190--Hb_000010_260 Hb_000329_020 Hb_000329_020 Hb_000753_190--Hb_000329_020 Hb_001387_020 Hb_001387_020 Hb_000753_190--Hb_001387_020 Hb_068804_040 Hb_068804_040 Hb_011249_050--Hb_068804_040 Hb_057098_010 Hb_057098_010 Hb_011249_050--Hb_057098_010 Hb_000098_290 Hb_000098_290 Hb_011249_050--Hb_000098_290 Hb_058722_010 Hb_058722_010 Hb_011249_050--Hb_058722_010 Hb_000679_060 Hb_000679_060 Hb_011249_050--Hb_000679_060 Hb_011861_060 Hb_011861_060 Hb_011249_050--Hb_011861_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0766227 0.0803373 0.00736484 0 0.0980922 0.0546913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.27067 0.195224 0 0.120033 0.225046

CAGE analysis