Hb_001733_060

Information

Type -
Description -
Location Contig1733: 113393-113822
Sequence    

Annotation

kegg
ID egr:104431099
description uncharacterized LOC104431099
nr
ID XP_010042087.1
description PREDICTED: uncharacterized protein LOC104431099 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A0D2ZYZ7
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001733_060 0.0 - - PREDICTED: uncharacterized protein LOC104431099 [Eucalyptus grandis]
2 Hb_001233_040 0.2457730061 - - PREDICTED: uncharacterized protein LOC105775263 [Gossypium raimondii]
3 Hb_000002_420 0.2600008494 - - PREDICTED: serine/threonine-protein kinase BLUS1-like [Citrus sinensis]
4 Hb_049944_010 0.2754388096 - - transducin family protein [Populus trichocarpa]
5 Hb_137461_010 0.2950619697 - - hypothetical protein POPTR_0011s03680g [Populus trichocarpa]
6 Hb_001912_070 0.3075596832 - - hypothetical protein POPTR_0003s03380g [Populus trichocarpa]
7 Hb_000016_120 0.3209004856 - - PREDICTED: uncharacterized protein LOC104610208 [Nelumbo nucifera]
8 Hb_002188_140 0.3300774398 - - PREDICTED: uncharacterized protein LOC105650814 [Jatropha curcas]
9 Hb_003964_090 0.3306272694 - - PREDICTED: 14-3-3-like protein GF14 iota [Jatropha curcas]
10 Hb_003124_210 0.3356807348 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005839_050 0.3404290357 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
12 Hb_000661_070 0.3451460485 - - -
13 Hb_005714_030 0.3478148631 - - PREDICTED: COBRA-like protein 6 isoform X1 [Gossypium raimondii]
14 Hb_033661_010 0.3560145442 - - PREDICTED: uncharacterized protein LOC105852393, partial [Cicer arietinum]
15 Hb_035398_010 0.3560827203 - - hypothetical protein JCGZ_13029 [Jatropha curcas]
16 Hb_001232_120 0.3596684293 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
17 Hb_005654_010 0.3601245317 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_001604_050 0.3612133249 - - PREDICTED: uncharacterized protein LOC105639208 [Jatropha curcas]
19 Hb_000661_080 0.3627020126 - - monoxygenase, putative [Ricinus communis]
20 Hb_150379_010 0.3645727997 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]

Gene co-expression network

sample Hb_001733_060 Hb_001733_060 Hb_001233_040 Hb_001233_040 Hb_001733_060--Hb_001233_040 Hb_000002_420 Hb_000002_420 Hb_001733_060--Hb_000002_420 Hb_049944_010 Hb_049944_010 Hb_001733_060--Hb_049944_010 Hb_137461_010 Hb_137461_010 Hb_001733_060--Hb_137461_010 Hb_001912_070 Hb_001912_070 Hb_001733_060--Hb_001912_070 Hb_000016_120 Hb_000016_120 Hb_001733_060--Hb_000016_120 Hb_035935_010 Hb_035935_010 Hb_001233_040--Hb_035935_010 Hb_003813_160 Hb_003813_160 Hb_001233_040--Hb_003813_160 Hb_033661_010 Hb_033661_010 Hb_001233_040--Hb_033661_010 Hb_000661_080 Hb_000661_080 Hb_001233_040--Hb_000661_080 Hb_057207_010 Hb_057207_010 Hb_001233_040--Hb_057207_010 Hb_007765_120 Hb_007765_120 Hb_000002_420--Hb_007765_120 Hb_033222_010 Hb_033222_010 Hb_000002_420--Hb_033222_010 Hb_000184_100 Hb_000184_100 Hb_000002_420--Hb_000184_100 Hb_000002_420--Hb_137461_010 Hb_003964_090 Hb_003964_090 Hb_000002_420--Hb_003964_090 Hb_049944_010--Hb_137461_010 Hb_005839_050 Hb_005839_050 Hb_049944_010--Hb_005839_050 Hb_049944_010--Hb_003964_090 Hb_004137_080 Hb_004137_080 Hb_049944_010--Hb_004137_080 Hb_027472_030 Hb_027472_030 Hb_049944_010--Hb_027472_030 Hb_049944_010--Hb_001912_070 Hb_005916_030 Hb_005916_030 Hb_137461_010--Hb_005916_030 Hb_000575_080 Hb_000575_080 Hb_137461_010--Hb_000575_080 Hb_075964_010 Hb_075964_010 Hb_137461_010--Hb_075964_010 Hb_000062_420 Hb_000062_420 Hb_137461_010--Hb_000062_420 Hb_137461_010--Hb_001912_070 Hb_172970_010 Hb_172970_010 Hb_001912_070--Hb_172970_010 Hb_003206_020 Hb_003206_020 Hb_001912_070--Hb_003206_020 Hb_001912_070--Hb_004137_080 Hb_150379_010 Hb_150379_010 Hb_001912_070--Hb_150379_010 Hb_012938_010 Hb_012938_010 Hb_000016_120--Hb_012938_010 Hb_003124_210 Hb_003124_210 Hb_000016_120--Hb_003124_210 Hb_000545_120 Hb_000545_120 Hb_000016_120--Hb_000545_120 Hb_000375_180 Hb_000375_180 Hb_000016_120--Hb_000375_180 Hb_005654_010 Hb_005654_010 Hb_000016_120--Hb_005654_010 Hb_008191_010 Hb_008191_010 Hb_000016_120--Hb_008191_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.177708 0 0 0 0.458616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.237866 0.373775 0 0.245254 0.317872

CAGE analysis