Hb_001233_040

Information

Type -
Description -
Location Contig1233: 102428-106329
Sequence    

Annotation

kegg
ID mdm:103431774
description uncharacterized LOC103431774
nr
ID XP_012453246.1
description PREDICTED: uncharacterized protein LOC105775263 [Gossypium raimondii]
swissprot
ID P92523
description Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1
trembl
ID Q7XLJ7
description OSJNBa0009K15.13 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0009K15.13 PE=4 SV=3
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001233_040 0.0 - - PREDICTED: uncharacterized protein LOC105775263 [Gossypium raimondii]
2 Hb_035935_010 0.2178331995 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
3 Hb_001733_060 0.2457730061 - - PREDICTED: uncharacterized protein LOC104431099 [Eucalyptus grandis]
4 Hb_003813_160 0.2705337712 - - -
5 Hb_033661_010 0.2797432374 - - PREDICTED: uncharacterized protein LOC105852393, partial [Cicer arietinum]
6 Hb_000661_080 0.2865372942 - - monoxygenase, putative [Ricinus communis]
7 Hb_057207_010 0.2904983457 - - hypothetical protein F383_17010 [Gossypium arboreum]
8 Hb_005654_010 0.2937316828 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_003683_080 0.3193318737 - - Angio-associated migratory cell protein, putative [Ricinus communis]
10 Hb_000703_270 0.3274390306 - - hypothetical protein B456_012G039600 [Gossypium raimondii]
11 Hb_001490_030 0.3311027588 - - PREDICTED: psbP domain-containing protein 6, chloroplastic [Jatropha curcas]
12 Hb_000753_190 0.33274434 - - PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]
13 Hb_002188_140 0.3345110882 - - PREDICTED: uncharacterized protein LOC105650814 [Jatropha curcas]
14 Hb_000375_180 0.33563896 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
15 Hb_001604_050 0.3385444163 - - PREDICTED: uncharacterized protein LOC105639208 [Jatropha curcas]
16 Hb_006212_030 0.3420742679 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
17 Hb_001246_070 0.3437187103 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
18 Hb_000661_070 0.3439956273 - - -
19 Hb_000258_140 0.34440589 - - conserved hypothetical protein [Ricinus communis]
20 Hb_023711_010 0.3461574785 - - -

Gene co-expression network

sample Hb_001233_040 Hb_001233_040 Hb_035935_010 Hb_035935_010 Hb_001233_040--Hb_035935_010 Hb_001733_060 Hb_001733_060 Hb_001233_040--Hb_001733_060 Hb_003813_160 Hb_003813_160 Hb_001233_040--Hb_003813_160 Hb_033661_010 Hb_033661_010 Hb_001233_040--Hb_033661_010 Hb_000661_080 Hb_000661_080 Hb_001233_040--Hb_000661_080 Hb_057207_010 Hb_057207_010 Hb_001233_040--Hb_057207_010 Hb_006869_010 Hb_006869_010 Hb_035935_010--Hb_006869_010 Hb_035935_010--Hb_003813_160 Hb_158869_010 Hb_158869_010 Hb_035935_010--Hb_158869_010 Hb_049717_010 Hb_049717_010 Hb_035935_010--Hb_049717_010 Hb_003683_080 Hb_003683_080 Hb_035935_010--Hb_003683_080 Hb_000002_420 Hb_000002_420 Hb_001733_060--Hb_000002_420 Hb_049944_010 Hb_049944_010 Hb_001733_060--Hb_049944_010 Hb_137461_010 Hb_137461_010 Hb_001733_060--Hb_137461_010 Hb_001912_070 Hb_001912_070 Hb_001733_060--Hb_001912_070 Hb_000016_120 Hb_000016_120 Hb_001733_060--Hb_000016_120 Hb_001604_050 Hb_001604_050 Hb_003813_160--Hb_001604_050 Hb_003813_160--Hb_033661_010 Hb_184403_020 Hb_184403_020 Hb_003813_160--Hb_184403_020 Hb_000753_190 Hb_000753_190 Hb_003813_160--Hb_000753_190 Hb_011249_050 Hb_011249_050 Hb_003813_160--Hb_011249_050 Hb_001277_230 Hb_001277_230 Hb_033661_010--Hb_001277_230 Hb_002304_020 Hb_002304_020 Hb_033661_010--Hb_002304_020 Hb_080085_010 Hb_080085_010 Hb_033661_010--Hb_080085_010 Hb_103362_010 Hb_103362_010 Hb_033661_010--Hb_103362_010 Hb_158560_010 Hb_158560_010 Hb_033661_010--Hb_158560_010 Hb_004785_080 Hb_004785_080 Hb_033661_010--Hb_004785_080 Hb_004445_020 Hb_004445_020 Hb_000661_080--Hb_004445_020 Hb_000795_060 Hb_000795_060 Hb_000661_080--Hb_000795_060 Hb_000258_140 Hb_000258_140 Hb_000661_080--Hb_000258_140 Hb_001490_030 Hb_001490_030 Hb_000661_080--Hb_001490_030 Hb_001454_260 Hb_001454_260 Hb_000661_080--Hb_001454_260 Hb_000084_200 Hb_000084_200 Hb_000661_080--Hb_000084_200 Hb_126044_010 Hb_126044_010 Hb_057207_010--Hb_126044_010 Hb_001335_050 Hb_001335_050 Hb_057207_010--Hb_001335_050 Hb_107221_010 Hb_107221_010 Hb_057207_010--Hb_107221_010 Hb_005654_010 Hb_005654_010 Hb_057207_010--Hb_005654_010 Hb_007064_030 Hb_007064_030 Hb_057207_010--Hb_007064_030 Hb_001623_600 Hb_001623_600 Hb_057207_010--Hb_001623_600
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00535192 0.0044013 0 0 0 0.00981757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0121281 0.0190886 0 0.0113463 0.0204213

CAGE analysis