Hb_001277_230

Information

Type -
Description -
Location Contig1277: 189022-190020
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID K4CVR4
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc09g082880.1 PE=4 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_230 0.0 - - -
2 Hb_002248_030 0.1626112717 - - metallothionein-like protein [Hevea brasiliensis]
3 Hb_000032_060 0.1670681654 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005928_040 0.1797308699 - - phosphoinositide phosphatase family protein [Populus trichocarpa]
5 Hb_027472_140 0.1940466007 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646176 [Jatropha curcas]
6 Hb_177132_010 0.1941219621 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_158560_010 0.1975168685 - - PREDICTED: LOW QUALITY PROTEIN: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
8 Hb_004899_260 0.1980408225 - - PREDICTED: uncharacterized protein LOC105638006 [Jatropha curcas]
9 Hb_001080_090 0.2031822213 - - PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
10 Hb_002447_120 0.2033127953 - - hypothetical protein O988_01801, partial [Pseudogymnoascus pannorum VKM F-3808]
11 Hb_002461_060 0.2045206658 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
12 Hb_007479_070 0.2047201803 - - peroxisomal membrane protein [Hevea brasiliensis]
13 Hb_000300_080 0.2055728246 - - PREDICTED: probable S-sulfocysteine synthase, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_005276_200 0.2061728462 - - PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Jatropha curcas]
15 Hb_033661_010 0.2079768775 - - PREDICTED: uncharacterized protein LOC105852393, partial [Cicer arietinum]
16 Hb_004994_120 0.2099969537 - - PREDICTED: acyl-coenzyme A thioesterase 13-like isoform X1 [Jatropha curcas]
17 Hb_000130_260 0.2123226244 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X1 [Jatropha curcas]
18 Hb_006054_050 0.212398456 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
19 Hb_001123_260 0.2126951111 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
20 Hb_000731_170 0.2136633276 - - PREDICTED: phospholipase A I [Jatropha curcas]

Gene co-expression network

sample Hb_001277_230 Hb_001277_230 Hb_002248_030 Hb_002248_030 Hb_001277_230--Hb_002248_030 Hb_000032_060 Hb_000032_060 Hb_001277_230--Hb_000032_060 Hb_005928_040 Hb_005928_040 Hb_001277_230--Hb_005928_040 Hb_027472_140 Hb_027472_140 Hb_001277_230--Hb_027472_140 Hb_177132_010 Hb_177132_010 Hb_001277_230--Hb_177132_010 Hb_158560_010 Hb_158560_010 Hb_001277_230--Hb_158560_010 Hb_002248_030--Hb_027472_140 Hb_005288_170 Hb_005288_170 Hb_002248_030--Hb_005288_170 Hb_002248_030--Hb_005928_040 Hb_004324_110 Hb_004324_110 Hb_002248_030--Hb_004324_110 Hb_000672_030 Hb_000672_030 Hb_002248_030--Hb_000672_030 Hb_004916_020 Hb_004916_020 Hb_002248_030--Hb_004916_020 Hb_006788_160 Hb_006788_160 Hb_000032_060--Hb_006788_160 Hb_000218_010 Hb_000218_010 Hb_000032_060--Hb_000218_010 Hb_010642_030 Hb_010642_030 Hb_000032_060--Hb_010642_030 Hb_003849_250 Hb_003849_250 Hb_000032_060--Hb_003849_250 Hb_000753_200 Hb_000753_200 Hb_000032_060--Hb_000753_200 Hb_000866_470 Hb_000866_470 Hb_000032_060--Hb_000866_470 Hb_001006_100 Hb_001006_100 Hb_005928_040--Hb_001006_100 Hb_000218_020 Hb_000218_020 Hb_005928_040--Hb_000218_020 Hb_000398_020 Hb_000398_020 Hb_005928_040--Hb_000398_020 Hb_001617_040 Hb_001617_040 Hb_005928_040--Hb_001617_040 Hb_002000_070 Hb_002000_070 Hb_005928_040--Hb_002000_070 Hb_005928_040--Hb_005288_170 Hb_157023_020 Hb_157023_020 Hb_027472_140--Hb_157023_020 Hb_000445_470 Hb_000445_470 Hb_027472_140--Hb_000445_470 Hb_004607_090 Hb_004607_090 Hb_027472_140--Hb_004607_090 Hb_000292_100 Hb_000292_100 Hb_027472_140--Hb_000292_100 Hb_000731_170 Hb_000731_170 Hb_027472_140--Hb_000731_170 Hb_002893_040 Hb_002893_040 Hb_027472_140--Hb_002893_040 Hb_177132_010--Hb_000032_060 Hb_177132_010--Hb_010642_030 Hb_001741_120 Hb_001741_120 Hb_177132_010--Hb_001741_120 Hb_008489_020 Hb_008489_020 Hb_177132_010--Hb_008489_020 Hb_002151_080 Hb_002151_080 Hb_177132_010--Hb_002151_080 Hb_000648_040 Hb_000648_040 Hb_158560_010--Hb_000648_040 Hb_003417_040 Hb_003417_040 Hb_158560_010--Hb_003417_040 Hb_003849_280 Hb_003849_280 Hb_158560_010--Hb_003849_280 Hb_000614_150 Hb_000614_150 Hb_158560_010--Hb_000614_150 Hb_001080_090 Hb_001080_090 Hb_158560_010--Hb_001080_090 Hb_000110_270 Hb_000110_270 Hb_158560_010--Hb_000110_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0775548 0.13677 0.0516804 0.0540804 0.0637536 0.0929652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.101479 0.119719 0 0.0320971 0.163265

CAGE analysis