Hb_002248_030

Information

Type -
Description -
Location Contig2248: 36627-37677
Sequence    

Annotation

kegg
ID pop:POPTR_0019s13150g
description hypothetical protein
nr
ID ACI42984.1
description metallothionein-like protein [Hevea brasiliensis]
swissprot
ID O24058
description Metallothionein-like protein type 2 OS=Malus domestica GN=MT1 PE=3 SV=1
trembl
ID B6ECQ7
description Metallothionein OS=Hevea brasiliensis GN=MT1 PE=2 SV=1
Gene Ontology
ID GO:0046872
description metallothionein-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23354: 36525-37685
cDNA
(Sanger)
(ID:Location)		 004_M13.ab1: 36589-37680 , 007_E07.ab1: 36584-37605 , 008_H04.ab1: 36585-37680 , 014_I13.ab1: 36600-37680 , 015_F20.ab1: 36682-37680 , 015_I23.ab1: 36712-37680 , 021_N24.ab1: 36591-37601 , 025_C14.ab1: 36585-37689 , 027_L24.ab1: 37412-37680 , 032_D14.ab1: 36627-37689 , 033_A12.ab1: 36584-37605 , 036_L16.ab1: 36588-37680 , 039_I15.ab1: 36587-37399 , 046_C07.ab1: 36588-37676 , 052_E15.ab1: 36595-37677

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002248_030 0.0 - - metallothionein-like protein [Hevea brasiliensis]
2 Hb_027472_140 0.1267502937 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646176 [Jatropha curcas]
3 Hb_005288_170 0.1339639074 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Populus euphratica]
4 Hb_005928_040 0.1400783723 - - phosphoinositide phosphatase family protein [Populus trichocarpa]
5 Hb_004324_110 0.143781885 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
6 Hb_000672_030 0.1450603188 - - PREDICTED: uncharacterized protein LOC105628931 isoform X1 [Jatropha curcas]
7 Hb_004916_020 0.1460869084 - - PREDICTED: DNA ligase 4 [Jatropha curcas]
8 Hb_000175_100 0.149832495 - - protein kinase, putative [Ricinus communis]
9 Hb_007035_050 0.1508545504 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
10 Hb_005116_060 0.155997051 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
11 Hb_003142_030 0.1562193824 - - PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic [Jatropha curcas]
12 Hb_002461_060 0.1573327066 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
13 Hb_000445_470 0.1596507892 - - PREDICTED: RING finger and transmembrane domain-containing protein 1-like [Jatropha curcas]
14 Hb_001511_150 0.159768073 - - monovalent cation:proton antiporter, putative [Ricinus communis]
15 Hb_000705_170 0.1598131538 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
16 Hb_001089_030 0.1606627977 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
17 Hb_000487_210 0.1610606488 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
18 Hb_000340_400 0.1617567303 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
19 Hb_002374_290 0.1623381176 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X1 [Jatropha curcas]
20 Hb_001277_230 0.1626112717 - - -

Gene co-expression network

sample Hb_002248_030 Hb_002248_030 Hb_027472_140 Hb_027472_140 Hb_002248_030--Hb_027472_140 Hb_005288_170 Hb_005288_170 Hb_002248_030--Hb_005288_170 Hb_005928_040 Hb_005928_040 Hb_002248_030--Hb_005928_040 Hb_004324_110 Hb_004324_110 Hb_002248_030--Hb_004324_110 Hb_000672_030 Hb_000672_030 Hb_002248_030--Hb_000672_030 Hb_004916_020 Hb_004916_020 Hb_002248_030--Hb_004916_020 Hb_157023_020 Hb_157023_020 Hb_027472_140--Hb_157023_020 Hb_000445_470 Hb_000445_470 Hb_027472_140--Hb_000445_470 Hb_004607_090 Hb_004607_090 Hb_027472_140--Hb_004607_090 Hb_000292_100 Hb_000292_100 Hb_027472_140--Hb_000292_100 Hb_000731_170 Hb_000731_170 Hb_027472_140--Hb_000731_170 Hb_002893_040 Hb_002893_040 Hb_027472_140--Hb_002893_040 Hb_000705_170 Hb_000705_170 Hb_005288_170--Hb_000705_170 Hb_000049_260 Hb_000049_260 Hb_005288_170--Hb_000049_260 Hb_004236_050 Hb_004236_050 Hb_005288_170--Hb_004236_050 Hb_000861_080 Hb_000861_080 Hb_005288_170--Hb_000861_080 Hb_003929_280 Hb_003929_280 Hb_005288_170--Hb_003929_280 Hb_000454_130 Hb_000454_130 Hb_005288_170--Hb_000454_130 Hb_001006_100 Hb_001006_100 Hb_005928_040--Hb_001006_100 Hb_000218_020 Hb_000218_020 Hb_005928_040--Hb_000218_020 Hb_000398_020 Hb_000398_020 Hb_005928_040--Hb_000398_020 Hb_001617_040 Hb_001617_040 Hb_005928_040--Hb_001617_040 Hb_002000_070 Hb_002000_070 Hb_005928_040--Hb_002000_070 Hb_005928_040--Hb_005288_170 Hb_095296_010 Hb_095296_010 Hb_004324_110--Hb_095296_010 Hb_006588_210 Hb_006588_210 Hb_004324_110--Hb_006588_210 Hb_005116_060 Hb_005116_060 Hb_004324_110--Hb_005116_060 Hb_000260_180 Hb_000260_180 Hb_004324_110--Hb_000260_180 Hb_004324_110--Hb_005288_170 Hb_000696_090 Hb_000696_090 Hb_004324_110--Hb_000696_090 Hb_001860_020 Hb_001860_020 Hb_000672_030--Hb_001860_020 Hb_001225_030 Hb_001225_030 Hb_000672_030--Hb_001225_030 Hb_030116_010 Hb_030116_010 Hb_000672_030--Hb_030116_010 Hb_001247_120 Hb_001247_120 Hb_000672_030--Hb_001247_120 Hb_003175_030 Hb_003175_030 Hb_000672_030--Hb_003175_030 Hb_003682_030 Hb_003682_030 Hb_000672_030--Hb_003682_030 Hb_000648_080 Hb_000648_080 Hb_004916_020--Hb_000648_080 Hb_004916_020--Hb_000398_020 Hb_001541_250 Hb_001541_250 Hb_004916_020--Hb_001541_250 Hb_012565_050 Hb_012565_050 Hb_004916_020--Hb_012565_050 Hb_003666_020 Hb_003666_020 Hb_004916_020--Hb_003666_020 Hb_000289_040 Hb_000289_040 Hb_004916_020--Hb_000289_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
900.31 3204.2 1378.22 1333.18 1332.47 1639.08
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1631.22 2519.31 273.93 662.603 1590.39

CAGE analysis