Hb_001860_020

Information

Type -
Description -
Location Contig1860: 26655-29299
Sequence    

Annotation

kegg
ID rcu:RCOM_1299920
description hypothetical protein
nr
ID XP_012078868.1
description PREDICTED: transmembrane protein 64 [Jatropha curcas]
swissprot
ID Q55909
description TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1
trembl
ID A0A067KKX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13394 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001860_020 0.0 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
2 Hb_001247_120 0.0878322493 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
3 Hb_000672_030 0.0909830361 - - PREDICTED: uncharacterized protein LOC105628931 isoform X1 [Jatropha curcas]
4 Hb_001189_130 0.1246239257 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
5 Hb_046117_010 0.1259997817 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
6 Hb_001348_150 0.1287527435 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
7 Hb_000540_120 0.1315881285 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
8 Hb_000363_370 0.1321894899 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
9 Hb_002745_010 0.1336279142 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
10 Hb_001638_160 0.1354472125 - - PREDICTED: uncharacterized protein LOC105642785 [Jatropha curcas]
11 Hb_009771_100 0.1377050736 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
12 Hb_007894_130 0.1378221711 - - hypothetical protein RCOM_0584960 [Ricinus communis]
13 Hb_000025_330 0.1389190684 - - hypothetical protein JCGZ_22759 [Jatropha curcas]
14 Hb_001141_370 0.1407884738 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
15 Hb_000340_110 0.1421042752 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
16 Hb_006949_020 0.1441190145 - - PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X1 [Jatropha curcas]
17 Hb_004371_010 0.1447729629 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
18 Hb_002078_220 0.1450698522 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
19 Hb_001258_020 0.1472994653 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
20 Hb_003175_030 0.1475567272 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]

Gene co-expression network

sample Hb_001860_020 Hb_001860_020 Hb_001247_120 Hb_001247_120 Hb_001860_020--Hb_001247_120 Hb_000672_030 Hb_000672_030 Hb_001860_020--Hb_000672_030 Hb_001189_130 Hb_001189_130 Hb_001860_020--Hb_001189_130 Hb_046117_010 Hb_046117_010 Hb_001860_020--Hb_046117_010 Hb_001348_150 Hb_001348_150 Hb_001860_020--Hb_001348_150 Hb_000540_120 Hb_000540_120 Hb_001860_020--Hb_000540_120 Hb_005551_060 Hb_005551_060 Hb_001247_120--Hb_005551_060 Hb_001247_120--Hb_001348_150 Hb_001864_060 Hb_001864_060 Hb_001247_120--Hb_001864_060 Hb_000025_330 Hb_000025_330 Hb_001247_120--Hb_000025_330 Hb_001247_120--Hb_000672_030 Hb_001225_030 Hb_001225_030 Hb_000672_030--Hb_001225_030 Hb_030116_010 Hb_030116_010 Hb_000672_030--Hb_030116_010 Hb_003175_030 Hb_003175_030 Hb_000672_030--Hb_003175_030 Hb_003682_030 Hb_003682_030 Hb_000672_030--Hb_003682_030 Hb_000449_050 Hb_000449_050 Hb_001189_130--Hb_000449_050 Hb_001141_370 Hb_001141_370 Hb_001189_130--Hb_001141_370 Hb_000340_110 Hb_000340_110 Hb_001189_130--Hb_000340_110 Hb_000152_340 Hb_000152_340 Hb_001189_130--Hb_000152_340 Hb_001189_130--Hb_000540_120 Hb_001662_030 Hb_001662_030 Hb_001189_130--Hb_001662_030 Hb_000465_080 Hb_000465_080 Hb_046117_010--Hb_000465_080 Hb_009771_100 Hb_009771_100 Hb_046117_010--Hb_009771_100 Hb_012226_010 Hb_012226_010 Hb_046117_010--Hb_012226_010 Hb_046117_010--Hb_000540_120 Hb_003125_030 Hb_003125_030 Hb_046117_010--Hb_003125_030 Hb_000061_490 Hb_000061_490 Hb_046117_010--Hb_000061_490 Hb_002745_010 Hb_002745_010 Hb_001348_150--Hb_002745_010 Hb_076693_020 Hb_076693_020 Hb_001348_150--Hb_076693_020 Hb_001053_030 Hb_001053_030 Hb_001348_150--Hb_001053_030 Hb_000140_070 Hb_000140_070 Hb_001348_150--Hb_000140_070 Hb_011512_080 Hb_011512_080 Hb_001348_150--Hb_011512_080 Hb_011465_030 Hb_011465_030 Hb_000540_120--Hb_011465_030 Hb_007403_050 Hb_007403_050 Hb_000540_120--Hb_007403_050 Hb_000540_120--Hb_000140_070 Hb_010831_020 Hb_010831_020 Hb_000540_120--Hb_010831_020 Hb_000540_120--Hb_003125_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.04748 21.5527 5.53408 5.99684 9.86121 8.75001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.61666 6.94456 3.41644 3.52828 2.47756

CAGE analysis