Hb_005928_040

Information

Type -
Description -
Location Contig5928: 40952-48927
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06890g
description POPTRDRAFT_817146; phosphoinositide phosphatase family protein
nr
ID XP_002304245.1
description phosphoinositide phosphatase family protein [Populus trichocarpa]
swissprot
ID Q94A27
description Phosphoinositide phosphatase SAC2 OS=Arabidopsis thaliana GN=SAC2 PE=2 SV=1
trembl
ID B9GXR7
description Phosphoinositide phosphatase family protein OS=Populus trichocarpa GN=POPTR_0003s06890g PE=4 SV=1
Gene Ontology
ID GO:0004571
description phosphoinositide phosphatase sac2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005928_040 0.0 - - phosphoinositide phosphatase family protein [Populus trichocarpa]
2 Hb_001006_100 0.1107136797 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
3 Hb_000218_020 0.1220299488 - - synaptosomal associated protein, putative [Ricinus communis]
4 Hb_000398_020 0.1228919322 - - PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Jatropha curcas]
5 Hb_001617_040 0.1261989506 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_002000_070 0.1294248464 - - PREDICTED: LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Jatropha curcas]
7 Hb_005288_170 0.1302687391 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Populus euphratica]
8 Hb_029977_040 0.1325338645 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
9 Hb_000527_010 0.1327690365 - - katanin P80 subunit, putative [Ricinus communis]
10 Hb_000445_470 0.1330524347 - - PREDICTED: RING finger and transmembrane domain-containing protein 1-like [Jatropha curcas]
11 Hb_000003_400 0.1339333125 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_001277_300 0.1351363091 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
13 Hb_002542_130 0.1355443893 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
14 Hb_002477_250 0.1359216655 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
15 Hb_007479_070 0.1367979479 - - peroxisomal membrane protein [Hevea brasiliensis]
16 Hb_001258_100 0.1383285263 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
17 Hb_002374_290 0.1389400467 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X1 [Jatropha curcas]
18 Hb_004916_020 0.1390437616 - - PREDICTED: DNA ligase 4 [Jatropha curcas]
19 Hb_002248_030 0.1400783723 - - metallothionein-like protein [Hevea brasiliensis]
20 Hb_002814_110 0.141205454 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]

Gene co-expression network

sample Hb_005928_040 Hb_005928_040 Hb_001006_100 Hb_001006_100 Hb_005928_040--Hb_001006_100 Hb_000218_020 Hb_000218_020 Hb_005928_040--Hb_000218_020 Hb_000398_020 Hb_000398_020 Hb_005928_040--Hb_000398_020 Hb_001617_040 Hb_001617_040 Hb_005928_040--Hb_001617_040 Hb_002000_070 Hb_002000_070 Hb_005928_040--Hb_002000_070 Hb_005288_170 Hb_005288_170 Hb_005928_040--Hb_005288_170 Hb_000780_170 Hb_000780_170 Hb_001006_100--Hb_000780_170 Hb_000260_640 Hb_000260_640 Hb_001006_100--Hb_000260_640 Hb_005260_010 Hb_005260_010 Hb_001006_100--Hb_005260_010 Hb_001006_100--Hb_000398_020 Hb_001277_300 Hb_001277_300 Hb_001006_100--Hb_001277_300 Hb_000046_070 Hb_000046_070 Hb_001006_100--Hb_000046_070 Hb_002282_060 Hb_002282_060 Hb_000218_020--Hb_002282_060 Hb_012082_010 Hb_012082_010 Hb_000218_020--Hb_012082_010 Hb_007576_220 Hb_007576_220 Hb_000218_020--Hb_007576_220 Hb_000526_060 Hb_000526_060 Hb_000218_020--Hb_000526_060 Hb_003018_040 Hb_003018_040 Hb_000218_020--Hb_003018_040 Hb_002073_280 Hb_002073_280 Hb_000218_020--Hb_002073_280 Hb_000648_080 Hb_000648_080 Hb_000398_020--Hb_000648_080 Hb_007558_070 Hb_007558_070 Hb_000398_020--Hb_007558_070 Hb_000406_230 Hb_000406_230 Hb_000398_020--Hb_000406_230 Hb_000398_020--Hb_002000_070 Hb_000236_400 Hb_000236_400 Hb_000398_020--Hb_000236_400 Hb_004976_010 Hb_004976_010 Hb_000398_020--Hb_004976_010 Hb_029977_040 Hb_029977_040 Hb_001617_040--Hb_029977_040 Hb_001617_040--Hb_002000_070 Hb_001279_120 Hb_001279_120 Hb_001617_040--Hb_001279_120 Hb_007810_110 Hb_007810_110 Hb_001617_040--Hb_007810_110 Hb_003120_080 Hb_003120_080 Hb_001617_040--Hb_003120_080 Hb_002217_250 Hb_002217_250 Hb_001617_040--Hb_002217_250 Hb_002000_070--Hb_029977_040 Hb_000025_710 Hb_000025_710 Hb_002000_070--Hb_000025_710 Hb_000679_330 Hb_000679_330 Hb_002000_070--Hb_000679_330 Hb_000003_190 Hb_000003_190 Hb_002000_070--Hb_000003_190 Hb_000705_170 Hb_000705_170 Hb_005288_170--Hb_000705_170 Hb_000049_260 Hb_000049_260 Hb_005288_170--Hb_000049_260 Hb_004236_050 Hb_004236_050 Hb_005288_170--Hb_004236_050 Hb_000861_080 Hb_000861_080 Hb_005288_170--Hb_000861_080 Hb_003929_280 Hb_003929_280 Hb_005288_170--Hb_003929_280 Hb_000454_130 Hb_000454_130 Hb_005288_170--Hb_000454_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47015 4.89035 1.98378 2.47783 2.88121 1.87846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.17288 1.89571 0.405139 1.13242 3.02656

CAGE analysis