Hb_003018_040

Information

Type transcription factor
Description TF Family: C3H
Location Contig3018: 18353-24025
Sequence    

Annotation

kegg
ID rcu:RCOM_0018110
description hypothetical protein
nr
ID XP_002530750.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q7XM16
description Zinc finger CCCH domain-containing protein 30 OS=Oryza sativa subsp. japonica GN=Os04g0663200 PE=2 SV=3
trembl
ID B9SXN1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0018110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31754: 18437-22897 , PASA_asmbl_31755: 22902-24090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_040 0.0 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
2 Hb_012082_010 0.0869938138 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
3 Hb_000218_020 0.0909213844 - - synaptosomal associated protein, putative [Ricinus communis]
4 Hb_044653_020 0.0919402287 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
5 Hb_001454_220 0.1019397571 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
6 Hb_012038_010 0.104303545 - - phospholipid-transporting atpase, putative [Ricinus communis]
7 Hb_007017_070 0.1044792385 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
8 Hb_005188_040 0.1070702824 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
9 Hb_000122_220 0.1123257547 - - Prenylated Rab acceptor protein, putative [Ricinus communis]
10 Hb_000700_060 0.1127819497 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
11 Hb_006738_050 0.1130183678 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
12 Hb_000896_060 0.1147513728 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_001410_130 0.1149980694 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
14 Hb_002282_060 0.1152024507 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
15 Hb_004785_030 0.1154627091 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
16 Hb_004410_070 0.1158677916 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
17 Hb_000094_090 0.1171302398 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
18 Hb_000130_280 0.1172332917 - - PREDICTED: transcription factor GTE3, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_001856_220 0.1174002014 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002119_090 0.1186816608 - - PREDICTED: protein OBERON 3 [Jatropha curcas]

Gene co-expression network

sample Hb_003018_040 Hb_003018_040 Hb_012082_010 Hb_012082_010 Hb_003018_040--Hb_012082_010 Hb_000218_020 Hb_000218_020 Hb_003018_040--Hb_000218_020 Hb_044653_020 Hb_044653_020 Hb_003018_040--Hb_044653_020 Hb_001454_220 Hb_001454_220 Hb_003018_040--Hb_001454_220 Hb_012038_010 Hb_012038_010 Hb_003018_040--Hb_012038_010 Hb_007017_070 Hb_007017_070 Hb_003018_040--Hb_007017_070 Hb_012082_010--Hb_044653_020 Hb_002485_040 Hb_002485_040 Hb_012082_010--Hb_002485_040 Hb_000896_060 Hb_000896_060 Hb_012082_010--Hb_000896_060 Hb_012082_010--Hb_000218_020 Hb_000130_280 Hb_000130_280 Hb_012082_010--Hb_000130_280 Hb_002282_060 Hb_002282_060 Hb_000218_020--Hb_002282_060 Hb_007576_220 Hb_007576_220 Hb_000218_020--Hb_007576_220 Hb_000526_060 Hb_000526_060 Hb_000218_020--Hb_000526_060 Hb_002073_280 Hb_002073_280 Hb_000218_020--Hb_002073_280 Hb_012368_100 Hb_012368_100 Hb_044653_020--Hb_012368_100 Hb_044653_020--Hb_000896_060 Hb_004785_030 Hb_004785_030 Hb_044653_020--Hb_004785_030 Hb_000117_070 Hb_000117_070 Hb_044653_020--Hb_000117_070 Hb_005188_040 Hb_005188_040 Hb_044653_020--Hb_005188_040 Hb_002387_070 Hb_002387_070 Hb_044653_020--Hb_002387_070 Hb_000024_120 Hb_000024_120 Hb_001454_220--Hb_000024_120 Hb_001454_220--Hb_002073_280 Hb_002902_020 Hb_002902_020 Hb_001454_220--Hb_002902_020 Hb_000345_490 Hb_000345_490 Hb_001454_220--Hb_000345_490 Hb_000230_430 Hb_000230_430 Hb_001454_220--Hb_000230_430 Hb_001454_220--Hb_007576_220 Hb_012038_010--Hb_044653_020 Hb_009674_080 Hb_009674_080 Hb_012038_010--Hb_009674_080 Hb_004324_060 Hb_004324_060 Hb_012038_010--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_012038_010--Hb_003895_020 Hb_002942_110 Hb_002942_110 Hb_012038_010--Hb_002942_110 Hb_012038_010--Hb_000526_060 Hb_004410_070 Hb_004410_070 Hb_007017_070--Hb_004410_070 Hb_000227_310 Hb_000227_310 Hb_007017_070--Hb_000227_310 Hb_000723_110 Hb_000723_110 Hb_007017_070--Hb_000723_110 Hb_030545_030 Hb_030545_030 Hb_007017_070--Hb_030545_030 Hb_102438_030 Hb_102438_030 Hb_007017_070--Hb_102438_030 Hb_002903_140 Hb_002903_140 Hb_007017_070--Hb_002903_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.38852 24.5581 8.98632 8.98346 10.1985 5.72334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.54043 4.63539 4.6108 3.92042 6.8154

CAGE analysis