Hb_001741_120

Information

Type -
Description -
Location Contig1741: 146814-157032
Sequence    

Annotation

kegg
ID crb:CARUB_v10011543mg
description hypothetical protein
nr
ID XP_006304553.1
description hypothetical protein CARUB_v10011543mg, partial [Capsella rubella]
swissprot
ID Q8L770
description ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1
trembl
ID R0GNT1
description ATP-dependent Clp protease proteolytic subunit (Fragment) OS=Capsella rubella GN=CARUB_v10011543mg PE=3 SV=1
Gene Ontology
ID GO:0005739
description protease complex subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001741_120 0.0 - - hypothetical protein CARUB_v10011543mg, partial [Capsella rubella]
2 Hb_012760_130 0.1598925183 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
3 Hb_004883_050 0.1861580917 - - PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
4 Hb_007123_060 0.192622 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
5 Hb_000051_170 0.2000004486 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
6 Hb_003206_120 0.2093136678 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
7 Hb_003992_040 0.2094403743 - - Post-illumination chlorophyll fluorescence increase isoform 5 [Theobroma cacao]
8 Hb_002248_030 0.2100138577 - - metallothionein-like protein [Hevea brasiliensis]
9 Hb_003918_020 0.2103882612 - - -
10 Hb_001065_070 0.2118190924 - - -
11 Hb_003038_220 0.2121634944 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
12 Hb_004648_050 0.2125413371 - - ring finger protein, putative [Ricinus communis]
13 Hb_165279_010 0.2143962249 - - Kiwellin, putative [Ricinus communis]
14 Hb_001911_040 0.2145548457 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
15 Hb_000270_030 0.2147809483 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
16 Hb_005686_120 0.2150480602 - - -
17 Hb_001829_040 0.2160447032 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
18 Hb_004586_280 0.2165265514 - - PREDICTED: GEM-like protein 1 [Jatropha curcas]
19 Hb_085972_010 0.2174214212 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]
20 Hb_022181_030 0.2178166409 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001741_120 Hb_001741_120 Hb_012760_130 Hb_012760_130 Hb_001741_120--Hb_012760_130 Hb_004883_050 Hb_004883_050 Hb_001741_120--Hb_004883_050 Hb_007123_060 Hb_007123_060 Hb_001741_120--Hb_007123_060 Hb_000051_170 Hb_000051_170 Hb_001741_120--Hb_000051_170 Hb_003206_120 Hb_003206_120 Hb_001741_120--Hb_003206_120 Hb_003992_040 Hb_003992_040 Hb_001741_120--Hb_003992_040 Hb_012760_130--Hb_004883_050 Hb_000416_070 Hb_000416_070 Hb_012760_130--Hb_000416_070 Hb_012760_130--Hb_007123_060 Hb_005731_120 Hb_005731_120 Hb_012760_130--Hb_005731_120 Hb_001287_080 Hb_001287_080 Hb_012760_130--Hb_001287_080 Hb_003498_090 Hb_003498_090 Hb_012760_130--Hb_003498_090 Hb_004883_050--Hb_007123_060 Hb_001829_040 Hb_001829_040 Hb_004883_050--Hb_001829_040 Hb_001911_040 Hb_001911_040 Hb_004883_050--Hb_001911_040 Hb_133724_010 Hb_133724_010 Hb_004883_050--Hb_133724_010 Hb_059480_010 Hb_059480_010 Hb_004883_050--Hb_059480_010 Hb_001545_050 Hb_001545_050 Hb_007123_060--Hb_001545_050 Hb_000327_290 Hb_000327_290 Hb_007123_060--Hb_000327_290 Hb_184570_010 Hb_184570_010 Hb_007123_060--Hb_184570_010 Hb_012120_030 Hb_012120_030 Hb_007123_060--Hb_012120_030 Hb_011671_090 Hb_011671_090 Hb_000051_170--Hb_011671_090 Hb_000991_070 Hb_000991_070 Hb_000051_170--Hb_000991_070 Hb_156825_010 Hb_156825_010 Hb_000051_170--Hb_156825_010 Hb_001380_020 Hb_001380_020 Hb_000051_170--Hb_001380_020 Hb_000087_030 Hb_000087_030 Hb_000051_170--Hb_000087_030 Hb_001546_050 Hb_001546_050 Hb_000051_170--Hb_001546_050 Hb_000224_200 Hb_000224_200 Hb_003206_120--Hb_000224_200 Hb_000003_080 Hb_000003_080 Hb_003206_120--Hb_000003_080 Hb_005288_190 Hb_005288_190 Hb_003206_120--Hb_005288_190 Hb_001842_100 Hb_001842_100 Hb_003206_120--Hb_001842_100 Hb_001416_010 Hb_001416_010 Hb_003206_120--Hb_001416_010 Hb_001143_130 Hb_001143_130 Hb_003206_120--Hb_001143_130 Hb_026228_020 Hb_026228_020 Hb_003992_040--Hb_026228_020 Hb_002027_180 Hb_002027_180 Hb_003992_040--Hb_002027_180 Hb_003992_040--Hb_001829_040 Hb_002084_010 Hb_002084_010 Hb_003992_040--Hb_002084_010 Hb_003992_040--Hb_012760_130 Hb_000617_010 Hb_000617_010 Hb_003992_040--Hb_000617_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0698804 0.233576 0.108397 0.236013 0.0801582 0.296702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.255937 0.15094 0 0.0813494 0.101394

CAGE analysis