Hb_002084_010

Information

Type -
Description -
Location Contig2084: 37330-38091
Sequence    

Annotation

kegg
ID mdm:103425949
description DNA-directed RNA polymerase 2A-like
nr
ID CAN79881.1
description hypothetical protein VITISV_017990 [Vitis vinifera]
swissprot
ID Q8L6J4
description DNA-directed RNA polymerase 1A (Fragment) OS=Nicotiana tabacum GN=RPOT1-SYL PE=3 SV=2
trembl
ID A5CAT5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017990 PE=4 SV=1
Gene Ontology
ID GO:0005739
description dna-directed rna polymerase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002084_010 0.0 - - hypothetical protein VITISV_017990 [Vitis vinifera]
2 Hb_003992_040 0.1481875879 - - Post-illumination chlorophyll fluorescence increase isoform 5 [Theobroma cacao]
3 Hb_128998_010 0.1498949032 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
4 Hb_051424_010 0.1664256365 - - PREDICTED: putative methyltransferase At1g22800 [Jatropha curcas]
5 Hb_001386_140 0.1677457401 - - PREDICTED: B2 protein [Jatropha curcas]
6 Hb_010565_010 0.1681985617 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
7 Hb_112047_010 0.1701940687 - - -
8 Hb_002007_180 0.1732948843 - - PREDICTED: uncharacterized protein LOC105647525 [Jatropha curcas]
9 Hb_005714_130 0.1752384974 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
10 Hb_006663_090 0.177833072 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
11 Hb_013691_010 0.1845711591 - - PREDICTED: uncharacterized protein LOC103724099, partial [Phoenix dactylifera]
12 Hb_076875_020 0.1849872475 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
13 Hb_001752_040 0.1850070145 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
14 Hb_003038_220 0.1864356225 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
15 Hb_019813_010 0.1879827315 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
16 Hb_005023_030 0.1892343438 - - PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
17 Hb_058702_010 0.1894568851 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
18 Hb_183557_010 0.1899231461 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
19 Hb_000429_250 0.1905178478 - - hypothetical protein L484_000744 [Morus notabilis]
20 Hb_116638_010 0.1918601321 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002084_010 Hb_002084_010 Hb_003992_040 Hb_003992_040 Hb_002084_010--Hb_003992_040 Hb_128998_010 Hb_128998_010 Hb_002084_010--Hb_128998_010 Hb_051424_010 Hb_051424_010 Hb_002084_010--Hb_051424_010 Hb_001386_140 Hb_001386_140 Hb_002084_010--Hb_001386_140 Hb_010565_010 Hb_010565_010 Hb_002084_010--Hb_010565_010 Hb_112047_010 Hb_112047_010 Hb_002084_010--Hb_112047_010 Hb_026228_020 Hb_026228_020 Hb_003992_040--Hb_026228_020 Hb_002027_180 Hb_002027_180 Hb_003992_040--Hb_002027_180 Hb_001829_040 Hb_001829_040 Hb_003992_040--Hb_001829_040 Hb_012760_130 Hb_012760_130 Hb_003992_040--Hb_012760_130 Hb_000617_010 Hb_000617_010 Hb_003992_040--Hb_000617_010 Hb_128998_010--Hb_112047_010 Hb_010504_030 Hb_010504_030 Hb_128998_010--Hb_010504_030 Hb_006663_090 Hb_006663_090 Hb_128998_010--Hb_006663_090 Hb_000429_250 Hb_000429_250 Hb_128998_010--Hb_000429_250 Hb_000007_460 Hb_000007_460 Hb_128998_010--Hb_000007_460 Hb_001767_120 Hb_001767_120 Hb_128998_010--Hb_001767_120 Hb_051437_010 Hb_051437_010 Hb_051424_010--Hb_051437_010 Hb_106415_010 Hb_106415_010 Hb_051424_010--Hb_106415_010 Hb_008029_020 Hb_008029_020 Hb_051424_010--Hb_008029_020 Hb_051424_010--Hb_006663_090 Hb_181328_010 Hb_181328_010 Hb_051424_010--Hb_181328_010 Hb_115477_010 Hb_115477_010 Hb_051424_010--Hb_115477_010 Hb_001386_140--Hb_010565_010 Hb_005023_030 Hb_005023_030 Hb_001386_140--Hb_005023_030 Hb_001386_140--Hb_006663_090 Hb_002067_120 Hb_002067_120 Hb_001386_140--Hb_002067_120 Hb_001386_140--Hb_115477_010 Hb_054586_020 Hb_054586_020 Hb_001386_140--Hb_054586_020 Hb_010565_010--Hb_002067_120 Hb_000606_080 Hb_000606_080 Hb_010565_010--Hb_000606_080 Hb_010565_010--Hb_005023_030 Hb_004934_070 Hb_004934_070 Hb_010565_010--Hb_004934_070 Hb_005714_130 Hb_005714_130 Hb_010565_010--Hb_005714_130 Hb_112047_010--Hb_000429_250 Hb_001623_290 Hb_001623_290 Hb_112047_010--Hb_001623_290 Hb_001623_300 Hb_001623_300 Hb_112047_010--Hb_001623_300 Hb_000327_290 Hb_000327_290 Hb_112047_010--Hb_000327_290 Hb_000136_180 Hb_000136_180 Hb_112047_010--Hb_000136_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.72528 5.53519 2.34601 6.1098 2.72279 15.9382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.86714 4.79198 1.50028 1.37615 2.7005

CAGE analysis