Hb_008029_020

Information

Type -
Description -
Location Contig8029: 74173-74469
Sequence    

Annotation

kegg
ID rcu:RCOM_0943030
description hypothetical protein
nr
ID XP_012069342.1
description PREDICTED: uncharacterized protein LOC105631777 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03758 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58879: 74140-74342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008029_020 0.0 - - PREDICTED: uncharacterized protein LOC105631777 [Jatropha curcas]
2 Hb_051437_010 0.1466854823 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
3 Hb_002235_120 0.1502445674 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
4 Hb_000130_190 0.1507474183 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
5 Hb_051424_010 0.1540060327 - - PREDICTED: putative methyltransferase At1g22800 [Jatropha curcas]
6 Hb_019053_020 0.1604297711 - - hypothetical protein MIMGU_mgv1a0105441mg, partial [Erythranthe guttata]
7 Hb_001508_020 0.1604524453 - - myosin vIII, putative [Ricinus communis]
8 Hb_002742_070 0.1616392348 - - PREDICTED: villin-4-like [Jatropha curcas]
9 Hb_000062_060 0.1654875902 transcription factor TF Family: Orphans multi-sensor hybrid histidine kinase [Plautia stali symbiont]
10 Hb_002815_060 0.1657422868 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
11 Hb_121467_010 0.1701387716 - - tubulin-specific chaperone E, putative [Ricinus communis]
12 Hb_028227_010 0.1702102401 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
13 Hb_004040_040 0.1706186253 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
14 Hb_005144_030 0.1709498303 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
15 Hb_000486_060 0.1738137915 - - PREDICTED: immediate early response 3-interacting protein 1-like isoform X2 [Glycine max]
16 Hb_007186_020 0.1739518656 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
17 Hb_000136_190 0.1743943365 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
18 Hb_058702_010 0.1749470549 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
19 Hb_008484_010 0.1756024967 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
20 Hb_002400_330 0.1757703346 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_008029_020 Hb_008029_020 Hb_051437_010 Hb_051437_010 Hb_008029_020--Hb_051437_010 Hb_002235_120 Hb_002235_120 Hb_008029_020--Hb_002235_120 Hb_000130_190 Hb_000130_190 Hb_008029_020--Hb_000130_190 Hb_051424_010 Hb_051424_010 Hb_008029_020--Hb_051424_010 Hb_019053_020 Hb_019053_020 Hb_008029_020--Hb_019053_020 Hb_001508_020 Hb_001508_020 Hb_008029_020--Hb_001508_020 Hb_051437_010--Hb_051424_010 Hb_002742_070 Hb_002742_070 Hb_051437_010--Hb_002742_070 Hb_178041_010 Hb_178041_010 Hb_051437_010--Hb_178041_010 Hb_009119_040 Hb_009119_040 Hb_051437_010--Hb_009119_040 Hb_009119_020 Hb_009119_020 Hb_051437_010--Hb_009119_020 Hb_005408_020 Hb_005408_020 Hb_002235_120--Hb_005408_020 Hb_004376_030 Hb_004376_030 Hb_002235_120--Hb_004376_030 Hb_005462_020 Hb_005462_020 Hb_002235_120--Hb_005462_020 Hb_002320_070 Hb_002320_070 Hb_002235_120--Hb_002320_070 Hb_002903_080 Hb_002903_080 Hb_002235_120--Hb_002903_080 Hb_003436_050 Hb_003436_050 Hb_002235_120--Hb_003436_050 Hb_009119_030 Hb_009119_030 Hb_000130_190--Hb_009119_030 Hb_028707_080 Hb_028707_080 Hb_000130_190--Hb_028707_080 Hb_004935_080 Hb_004935_080 Hb_000130_190--Hb_004935_080 Hb_000130_190--Hb_002320_070 Hb_000130_190--Hb_019053_020 Hb_106415_010 Hb_106415_010 Hb_051424_010--Hb_106415_010 Hb_006663_090 Hb_006663_090 Hb_051424_010--Hb_006663_090 Hb_181328_010 Hb_181328_010 Hb_051424_010--Hb_181328_010 Hb_115477_010 Hb_115477_010 Hb_051424_010--Hb_115477_010 Hb_148079_010 Hb_148079_010 Hb_019053_020--Hb_148079_010 Hb_001541_090 Hb_001541_090 Hb_019053_020--Hb_001541_090 Hb_012023_020 Hb_012023_020 Hb_019053_020--Hb_012023_020 Hb_103760_010 Hb_103760_010 Hb_019053_020--Hb_103760_010 Hb_126295_010 Hb_126295_010 Hb_019053_020--Hb_126295_010 Hb_001488_410 Hb_001488_410 Hb_019053_020--Hb_001488_410 Hb_003529_130 Hb_003529_130 Hb_001508_020--Hb_003529_130 Hb_010925_020 Hb_010925_020 Hb_001508_020--Hb_010925_020 Hb_001369_350 Hb_001369_350 Hb_001508_020--Hb_001369_350 Hb_000021_020 Hb_000021_020 Hb_001508_020--Hb_000021_020 Hb_003894_040 Hb_003894_040 Hb_001508_020--Hb_003894_040 Hb_018202_050 Hb_018202_050 Hb_001508_020--Hb_018202_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.81719 3.47054 3.81618 4.68154 4.78051 13.0783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.383959 1.51259 1.28371 4.21724 2.78612

CAGE analysis