Hb_158560_010

Information

Type -
Description -
Location Contig158560: 1-1452
Sequence    

Annotation

kegg
ID rcu:RCOM_1600940
description AMP dependent ligase, putative (EC:6.2.1.26)
nr
ID XP_012073666.1
description PREDICTED: LOW QUALITY PROTEIN: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
swissprot
ID F4HUK6
description Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1
trembl
ID B9R8M5
description AMP dependent ligase, putative OS=Ricinus communis GN=RCOM_1600940 PE=4 SV=1
Gene Ontology
ID GO:0008756
description probable acyl-activating enzyme peroxisomal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158560_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
2 Hb_000648_040 0.1056368608 - - unknown [Populus trichocarpa]
3 Hb_003417_040 0.1131572097 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
4 Hb_003849_280 0.1147451995 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
5 Hb_000614_150 0.1182210213 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
6 Hb_001080_090 0.1193160029 - - PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
7 Hb_000110_270 0.1204123596 - - prp4, putative [Ricinus communis]
8 Hb_011364_020 0.121157781 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
9 Hb_005276_200 0.1211949837 - - PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Jatropha curcas]
10 Hb_004785_080 0.1236405517 - - hypothetical protein POPTR_0005s21250g [Populus trichocarpa]
11 Hb_001421_090 0.1286163544 - - hypothetical protein RCOM_1278080 [Ricinus communis]
12 Hb_013459_020 0.1300645988 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
13 Hb_000130_320 0.1308469822 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
14 Hb_000617_250 0.1333468723 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
15 Hb_004306_120 0.1338074345 - - DNA binding protein, putative [Ricinus communis]
16 Hb_004899_260 0.1338331952 - - PREDICTED: uncharacterized protein LOC105638006 [Jatropha curcas]
17 Hb_002973_110 0.1348741212 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000538_280 0.1368617471 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
19 Hb_011174_020 0.1380916916 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
20 Hb_017469_110 0.1395051266 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]

Gene co-expression network

sample Hb_158560_010 Hb_158560_010 Hb_000648_040 Hb_000648_040 Hb_158560_010--Hb_000648_040 Hb_003417_040 Hb_003417_040 Hb_158560_010--Hb_003417_040 Hb_003849_280 Hb_003849_280 Hb_158560_010--Hb_003849_280 Hb_000614_150 Hb_000614_150 Hb_158560_010--Hb_000614_150 Hb_001080_090 Hb_001080_090 Hb_158560_010--Hb_001080_090 Hb_000110_270 Hb_000110_270 Hb_158560_010--Hb_000110_270 Hb_000130_320 Hb_000130_320 Hb_000648_040--Hb_000130_320 Hb_005731_160 Hb_005731_160 Hb_000648_040--Hb_005731_160 Hb_001080_070 Hb_001080_070 Hb_000648_040--Hb_001080_070 Hb_002758_010 Hb_002758_010 Hb_000648_040--Hb_002758_010 Hb_000613_110 Hb_000613_110 Hb_000648_040--Hb_000613_110 Hb_003475_020 Hb_003475_020 Hb_000648_040--Hb_003475_020 Hb_017469_110 Hb_017469_110 Hb_003417_040--Hb_017469_110 Hb_000538_280 Hb_000538_280 Hb_003417_040--Hb_000538_280 Hb_001008_130 Hb_001008_130 Hb_003417_040--Hb_001008_130 Hb_009288_020 Hb_009288_020 Hb_003417_040--Hb_009288_020 Hb_013459_020 Hb_013459_020 Hb_003417_040--Hb_013459_020 Hb_000169_020 Hb_000169_020 Hb_003417_040--Hb_000169_020 Hb_004306_120 Hb_004306_120 Hb_003849_280--Hb_004306_120 Hb_011174_020 Hb_011174_020 Hb_003849_280--Hb_011174_020 Hb_033312_130 Hb_033312_130 Hb_003849_280--Hb_033312_130 Hb_003849_280--Hb_001008_130 Hb_000844_050 Hb_000844_050 Hb_003849_280--Hb_000844_050 Hb_003849_280--Hb_013459_020 Hb_000614_150--Hb_003849_280 Hb_000434_070 Hb_000434_070 Hb_000614_150--Hb_000434_070 Hb_000614_150--Hb_000538_280 Hb_000196_060 Hb_000196_060 Hb_000614_150--Hb_000196_060 Hb_001124_050 Hb_001124_050 Hb_000614_150--Hb_001124_050 Hb_001377_100 Hb_001377_100 Hb_000614_150--Hb_001377_100 Hb_004899_260 Hb_004899_260 Hb_001080_090--Hb_004899_260 Hb_000282_080 Hb_000282_080 Hb_001080_090--Hb_000282_080 Hb_001790_080 Hb_001790_080 Hb_001080_090--Hb_001790_080 Hb_000130_260 Hb_000130_260 Hb_001080_090--Hb_000130_260 Hb_001589_010 Hb_001589_010 Hb_001080_090--Hb_001589_010 Hb_001080_090--Hb_002758_010 Hb_001726_100 Hb_001726_100 Hb_000110_270--Hb_001726_100 Hb_000363_300 Hb_000363_300 Hb_000110_270--Hb_000363_300 Hb_005488_170 Hb_005488_170 Hb_000110_270--Hb_005488_170 Hb_005211_020 Hb_005211_020 Hb_000110_270--Hb_005211_020 Hb_000110_270--Hb_004306_120 Hb_012244_020 Hb_012244_020 Hb_000110_270--Hb_012244_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01377 2.58835 1.23446 1.92343 1.06635 1.49223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37998 1.67015 0.364471 1.68042 5.09994

CAGE analysis