Hb_003417_040

Information

Type transcription factor
Description TF Family: mTERF
Location Contig3417: 41080-45058
Sequence    

Annotation

kegg
ID pop:POPTR_0017s10070g
description hypothetical protein
nr
ID KDP46315.1
description hypothetical protein JCGZ_10155 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LNA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10155 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial transcription termination factor family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35718: 42526-45004 , PASA_asmbl_35719: 42526-45004 , PASA_asmbl_35720: 43078-43320
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003417_040 0.0 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
2 Hb_017469_110 0.0676736606 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
3 Hb_000538_280 0.0763301059 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
4 Hb_001008_130 0.0773911723 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
5 Hb_009288_020 0.0798306066 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
6 Hb_013459_020 0.0813814862 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
7 Hb_000169_020 0.0841089255 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
8 Hb_000340_040 0.0847618224 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
9 Hb_033312_130 0.0850059976 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
10 Hb_000085_210 0.0884842161 - - DNA topoisomerase type I, putative [Ricinus communis]
11 Hb_003040_050 0.0895410688 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
12 Hb_005511_140 0.0898672644 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
13 Hb_003849_280 0.0899491131 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
14 Hb_005276_200 0.0905479967 - - PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Jatropha curcas]
15 Hb_000445_090 0.0906861983 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
16 Hb_000599_270 0.0907884785 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3 [Jatropha curcas]
17 Hb_006816_370 0.0910553019 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
18 Hb_011174_020 0.0916071318 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
19 Hb_004531_100 0.0916092148 - - PREDICTED: zinc phosphodiesterase ELAC protein 2 isoform X1 [Jatropha curcas]
20 Hb_033312_010 0.0918730337 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003417_040 Hb_003417_040 Hb_017469_110 Hb_017469_110 Hb_003417_040--Hb_017469_110 Hb_000538_280 Hb_000538_280 Hb_003417_040--Hb_000538_280 Hb_001008_130 Hb_001008_130 Hb_003417_040--Hb_001008_130 Hb_009288_020 Hb_009288_020 Hb_003417_040--Hb_009288_020 Hb_013459_020 Hb_013459_020 Hb_003417_040--Hb_013459_020 Hb_000169_020 Hb_000169_020 Hb_003417_040--Hb_000169_020 Hb_017469_110--Hb_013459_020 Hb_011174_020 Hb_011174_020 Hb_017469_110--Hb_011174_020 Hb_000795_040 Hb_000795_040 Hb_017469_110--Hb_000795_040 Hb_005276_200 Hb_005276_200 Hb_017469_110--Hb_005276_200 Hb_002581_010 Hb_002581_010 Hb_017469_110--Hb_002581_010 Hb_001008_070 Hb_001008_070 Hb_017469_110--Hb_001008_070 Hb_003040_050 Hb_003040_050 Hb_000538_280--Hb_003040_050 Hb_000193_330 Hb_000193_330 Hb_000538_280--Hb_000193_330 Hb_000538_280--Hb_009288_020 Hb_001005_130 Hb_001005_130 Hb_000538_280--Hb_001005_130 Hb_000059_230 Hb_000059_230 Hb_000538_280--Hb_000059_230 Hb_005701_130 Hb_005701_130 Hb_000538_280--Hb_005701_130 Hb_033312_130 Hb_033312_130 Hb_001008_130--Hb_033312_130 Hb_006210_010 Hb_006210_010 Hb_001008_130--Hb_006210_010 Hb_006100_020 Hb_006100_020 Hb_001008_130--Hb_006100_020 Hb_048476_080 Hb_048476_080 Hb_001008_130--Hb_048476_080 Hb_003680_020 Hb_003680_020 Hb_001008_130--Hb_003680_020 Hb_000960_080 Hb_000960_080 Hb_001008_130--Hb_000960_080 Hb_009288_020--Hb_003040_050 Hb_006663_060 Hb_006663_060 Hb_009288_020--Hb_006663_060 Hb_073171_070 Hb_073171_070 Hb_009288_020--Hb_073171_070 Hb_006839_010 Hb_006839_010 Hb_009288_020--Hb_006839_010 Hb_009288_020--Hb_000059_230 Hb_009288_020--Hb_011174_020 Hb_000826_070 Hb_000826_070 Hb_013459_020--Hb_000826_070 Hb_013459_020--Hb_011174_020 Hb_002973_110 Hb_002973_110 Hb_013459_020--Hb_002973_110 Hb_001999_140 Hb_001999_140 Hb_013459_020--Hb_001999_140 Hb_013459_020--Hb_001008_070 Hb_000340_040 Hb_000340_040 Hb_000169_020--Hb_000340_040 Hb_000139_080 Hb_000139_080 Hb_000169_020--Hb_000139_080 Hb_000169_020--Hb_006100_020 Hb_006913_020 Hb_006913_020 Hb_000169_020--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_000169_020--Hb_007413_010 Hb_004324_360 Hb_004324_360 Hb_000169_020--Hb_004324_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.02994 6.13046 4.99099 4.78081 2.86093 3.21021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.62453 3.93511 2.22472 3.49733 9.64376

CAGE analysis