Hb_000434_070

Information

Type -
Description -
Location Contig434: 80515-96627
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03270g
description KOW domain-containing transcription factor family protein
nr
ID XP_012080988.1
description PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
swissprot
ID Q9STN3
description Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2
trembl
ID A0A067KF58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16173 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42414: 80659-81053 , PASA_asmbl_42415: 81187-96632 , PASA_asmbl_42416: 84556-96534
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000434_070 0.0 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
2 Hb_000928_090 0.0743888372 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
3 Hb_004223_160 0.0891942198 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
4 Hb_002400_140 0.0893996569 - - protein kinase, putative [Ricinus communis]
5 Hb_005832_010 0.0912307308 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
6 Hb_014720_020 0.0912618565 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
7 Hb_001085_030 0.0960505444 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
8 Hb_012244_020 0.0979630027 - - calpain, putative [Ricinus communis]
9 Hb_001477_020 0.0984335014 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
10 Hb_002333_050 0.0986739393 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
11 Hb_123531_010 0.0987669374 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
12 Hb_001124_050 0.0989149432 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
13 Hb_001133_030 0.0994684361 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
14 Hb_009486_170 0.1000309784 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
15 Hb_188063_010 0.1005301095 - - hypothetical protein RCOM_1469330 [Ricinus communis]
16 Hb_001951_170 0.1012943073 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
17 Hb_000934_210 0.1013694473 - - suppressor of ty, putative [Ricinus communis]
18 Hb_000265_090 0.1013881724 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
19 Hb_003604_050 0.1031361618 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
20 Hb_004109_380 0.1033363486 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000434_070 Hb_000434_070 Hb_000928_090 Hb_000928_090 Hb_000434_070--Hb_000928_090 Hb_004223_160 Hb_004223_160 Hb_000434_070--Hb_004223_160 Hb_002400_140 Hb_002400_140 Hb_000434_070--Hb_002400_140 Hb_005832_010 Hb_005832_010 Hb_000434_070--Hb_005832_010 Hb_014720_020 Hb_014720_020 Hb_000434_070--Hb_014720_020 Hb_001085_030 Hb_001085_030 Hb_000434_070--Hb_001085_030 Hb_000934_210 Hb_000934_210 Hb_000928_090--Hb_000934_210 Hb_011021_050 Hb_011021_050 Hb_000928_090--Hb_011021_050 Hb_012244_020 Hb_012244_020 Hb_000928_090--Hb_012244_020 Hb_021596_010 Hb_021596_010 Hb_000928_090--Hb_021596_010 Hb_001648_020 Hb_001648_020 Hb_000928_090--Hb_001648_020 Hb_004223_160--Hb_005832_010 Hb_001953_120 Hb_001953_120 Hb_004223_160--Hb_001953_120 Hb_001951_170 Hb_001951_170 Hb_004223_160--Hb_001951_170 Hb_009476_090 Hb_009476_090 Hb_004223_160--Hb_009476_090 Hb_001904_030 Hb_001904_030 Hb_004223_160--Hb_001904_030 Hb_003142_040 Hb_003142_040 Hb_004223_160--Hb_003142_040 Hb_003581_170 Hb_003581_170 Hb_002400_140--Hb_003581_170 Hb_000105_040 Hb_000105_040 Hb_002400_140--Hb_000105_040 Hb_000836_020 Hb_000836_020 Hb_002400_140--Hb_000836_020 Hb_003604_050 Hb_003604_050 Hb_002400_140--Hb_003604_050 Hb_004648_050 Hb_004648_050 Hb_002400_140--Hb_004648_050 Hb_188063_010 Hb_188063_010 Hb_002400_140--Hb_188063_010 Hb_005832_010--Hb_001904_030 Hb_005832_010--Hb_009476_090 Hb_002007_110 Hb_002007_110 Hb_005832_010--Hb_002007_110 Hb_005832_010--Hb_001951_170 Hb_000172_340 Hb_000172_340 Hb_005832_010--Hb_000172_340 Hb_003120_070 Hb_003120_070 Hb_014720_020--Hb_003120_070 Hb_001221_090 Hb_001221_090 Hb_014720_020--Hb_001221_090 Hb_014720_020--Hb_003604_050 Hb_002005_120 Hb_002005_120 Hb_014720_020--Hb_002005_120 Hb_007818_030 Hb_007818_030 Hb_014720_020--Hb_007818_030 Hb_014720_020--Hb_001904_030 Hb_001133_030 Hb_001133_030 Hb_001085_030--Hb_001133_030 Hb_000261_150 Hb_000261_150 Hb_001085_030--Hb_000261_150 Hb_000925_090 Hb_000925_090 Hb_001085_030--Hb_000925_090 Hb_000083_070 Hb_000083_070 Hb_001085_030--Hb_000083_070 Hb_007120_060 Hb_007120_060 Hb_001085_030--Hb_007120_060 Hb_014497_020 Hb_014497_020 Hb_001085_030--Hb_014497_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.21084 30.082 8.80822 14.3189 13.3626 11.4537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.45996 7.43605 3.68799 15.9822 25.0058

CAGE analysis