Hb_000928_090

Information

Type -
Description -
Location Contig928: 55611-58211
Sequence    

Annotation

kegg
ID pop:POPTR_0013s07330g
description POPTRDRAFT_807023; D111/G-patch domain-containing family protein
nr
ID XP_012070277.1
description PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
swissprot
ID Q9SHG6
description Septin and tuftelin-interacting protein 1 homolog 1 OS=Arabidopsis thaliana GN=STIPL1 PE=2 SV=1
trembl
ID A0A067L644
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02584 PE=3 SV=1
Gene Ontology
ID GO:0005634
description septin and tuftelin-interacting protein 1 homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_090 0.0 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
2 Hb_000434_070 0.0743888372 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
3 Hb_000934_210 0.0794452784 - - suppressor of ty, putative [Ricinus communis]
4 Hb_011021_050 0.0800998777 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
5 Hb_012244_020 0.0832881322 - - calpain, putative [Ricinus communis]
6 Hb_021596_010 0.0848318228 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
7 Hb_001648_020 0.0894861157 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
8 Hb_005408_030 0.0906148443 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
9 Hb_002521_020 0.0906401715 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
10 Hb_123531_010 0.0913636154 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
11 Hb_004306_120 0.0914335652 - - DNA binding protein, putative [Ricinus communis]
12 Hb_007012_040 0.0936790707 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
13 Hb_000363_300 0.0945087795 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
14 Hb_000035_100 0.0945886254 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_000170_100 0.0950338099 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
16 Hb_001477_020 0.0954223123 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
17 Hb_002609_080 0.0967320051 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
18 Hb_000154_130 0.0968472586 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
19 Hb_116349_130 0.0969836237 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
20 Hb_000811_060 0.0969836964 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]

Gene co-expression network

sample Hb_000928_090 Hb_000928_090 Hb_000434_070 Hb_000434_070 Hb_000928_090--Hb_000434_070 Hb_000934_210 Hb_000934_210 Hb_000928_090--Hb_000934_210 Hb_011021_050 Hb_011021_050 Hb_000928_090--Hb_011021_050 Hb_012244_020 Hb_012244_020 Hb_000928_090--Hb_012244_020 Hb_021596_010 Hb_021596_010 Hb_000928_090--Hb_021596_010 Hb_001648_020 Hb_001648_020 Hb_000928_090--Hb_001648_020 Hb_004223_160 Hb_004223_160 Hb_000434_070--Hb_004223_160 Hb_002400_140 Hb_002400_140 Hb_000434_070--Hb_002400_140 Hb_005832_010 Hb_005832_010 Hb_000434_070--Hb_005832_010 Hb_014720_020 Hb_014720_020 Hb_000434_070--Hb_014720_020 Hb_001085_030 Hb_001085_030 Hb_000434_070--Hb_001085_030 Hb_027472_220 Hb_027472_220 Hb_000934_210--Hb_027472_220 Hb_000934_210--Hb_012244_020 Hb_123531_010 Hb_123531_010 Hb_000934_210--Hb_123531_010 Hb_002007_110 Hb_002007_110 Hb_000934_210--Hb_002007_110 Hb_002357_070 Hb_002357_070 Hb_000934_210--Hb_002357_070 Hb_000958_050 Hb_000958_050 Hb_000934_210--Hb_000958_050 Hb_004306_120 Hb_004306_120 Hb_011021_050--Hb_004306_120 Hb_005408_030 Hb_005408_030 Hb_011021_050--Hb_005408_030 Hb_002609_080 Hb_002609_080 Hb_011021_050--Hb_002609_080 Hb_000009_410 Hb_000009_410 Hb_011021_050--Hb_000009_410 Hb_000656_060 Hb_000656_060 Hb_011021_050--Hb_000656_060 Hb_005186_040 Hb_005186_040 Hb_011021_050--Hb_005186_040 Hb_012244_020--Hb_005186_040 Hb_011174_020 Hb_011174_020 Hb_012244_020--Hb_011174_020 Hb_000363_300 Hb_000363_300 Hb_012244_020--Hb_000363_300 Hb_012244_020--Hb_001648_020 Hb_000925_090 Hb_000925_090 Hb_012244_020--Hb_000925_090 Hb_003047_020 Hb_003047_020 Hb_021596_010--Hb_003047_020 Hb_000367_020 Hb_000367_020 Hb_021596_010--Hb_000367_020 Hb_000003_410 Hb_000003_410 Hb_021596_010--Hb_000003_410 Hb_021596_010--Hb_000958_050 Hb_021596_010--Hb_005408_030 Hb_008686_020 Hb_008686_020 Hb_021596_010--Hb_008686_020 Hb_001648_020--Hb_005186_040 Hb_001648_020--Hb_005408_030 Hb_001648_020--Hb_011174_020 Hb_001648_020--Hb_000934_210 Hb_001563_010 Hb_001563_010 Hb_001648_020--Hb_001563_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.66576 12.5336 4.67634 5.75906 5.32998 3.83511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45292 2.89024 2.92233 6.47196 11.3061

CAGE analysis